Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03383 ATGGCAGTATCTTGCTACTGTAAGAAAAGTTATGTACGGGCTTGTTTAACATTAGCGCTCTTGCTTCTTGTAACACCTCATGCAGCTTCATTGGAATTCAACTATCAGAAATTTGGTGACACGAGAAACGTCTTCAATACTTCGGGAGATGTTAAACCTCGACAAGGAGTGCTCAAACTCACCAAAAATGAAACATTCAGTTATGGTAGAGTCATATATCCCAAACTATTGCATCTTTGGGACATAAACTCAGGGAAAGTCACGGATTTCACTACCCATTTCTCCTTTAGCATCAGCGCCTTAAATAATAAACATGCAGATGGCATCGCCTTCTTTCTGGCACGTCCAGGCTTTCCATCGGTTTCCCCAAGAGATGGAGCTGGTATTGGTCTTGCCAGCCGTGATCAACTCAGAAATCAAAGTTACAAATTGGATCATCCATTTGTGTCAGTGGAATTTGATACCTACGCTAATCCATGGGAGCTTCAGCCGTATCCCCATGTGGGTATCGATATCAATTCAATCGTATCTTCTGCGACTGCAGAGTGGTTCACCAGCCCGTCTGAGAGTGGATACGAGGCTGATATTAGTTTCGATTCCAGTTCAAACACATTAAGTGTCACCTTTACTGGGTATAAGGCGGACGTCGTAGTTCAAGGGAACTTATCCTCTGTGGTCAATCTGAAAGATGTCTTACCTGATTGGGTTGAATTTGGCTTTTCTGCAGCAACAGGAGATTATTACGACGTATATGCTCTTAGCTCATGGTCCTTCAACTCTAGTTTTCACATGGAAGCACATAAGGGTGGAAGCAAAAGAGGGCTGGTGATAAGGCTGAGCCTTGGAATTGGTGCAGGTATTTTAATTGTTATTTTCGGGGTAACTTTTCTTGTGAGATGGATGCTGAGGACTACAGGCATGGAAGATGCCTCACTTTTTGGCCATGCCATGGACAATGATTTCGAAAAAGTCTCTCTACCCAAGAAGTTTTCCTTTGAAGAACTGGGCAGAGCAACTAATAACTTCGCTAGAGAAAACAAAATAGGACAGGGAGGTTTTGGGGCCGTCTACAGGGGATTTGTTAAAGAGTTGAACACCGATGTTGCCATCAAGAAGGTATCTCGTGAATCTACACAAGGGATGAAAGAGTACATATCTGAAGTAAAGATCTTTGGTCAACTGAGGCATAAGAATTTGGTTCAACTCTTTGGATGGTGCCATCAGCATGAGGACCTGCTGCTGATTTATGAGTTCATGGAAAATGGAAGCTTGGATTCTTATCTGTTCAAGGGAAAAGGCCTGCTGACATGGAAAGTGAGATATAATATTGCGAGAGGTTTGGCTTCAGCAATGTTATACCTGCATGAAGAGTGGGAAGAATGTGTTCTTCATAGAGACATAAAATCCAGCAATGTTATATTAGCCAGAGTAATGGATCATGAGATAGGATCAAAAACAACTGTTTTAGCAGGAACAATTGGGTATTTGCCTCCTGAAGCTATCACAAGAGGCAAGGCTAGTAGGGAGTCCGATGTGTACAGCTTTGGAGTTGTTGCTTTGGAGATAGCCTGTGGTAGAAAGACTGTTGAAGCTAATATGGTAGAAGATAATATTTATTTGGTAGATTGGGTTTGGAAACTCTATGGCATGGATGAACTCCTCAAAGCCTCTGATCCAAGCTTATATAGACATTTTGATGAGAAGGAAATGGAGACTTTACTGATAATTGGCCTTTGGTGCACTCACACGGATTACCTTCAGAGGCCTACTATGAGGCAAGCAGTTCAAGTGCTTAGTTTTGAAGTACCAATGCCCACACTCACACCACGGGTGCCCATTCTCTGA 1845 0.426 MAVSCYCKKSYVRACLTLALLLLVTPHAASLEFNYQKFGDTRNVFNTSGDVKPRQGVLKLTKNETFSYGRVIYPKLLHLWDINSGKVTDFTTHFSFSISALNNKHADGIAFFLARPGFPSVSPRDGAGIGLASRDQLRNQSYKLDHPFVSVEFDTYANPWELQPYPHVGIDINSIVSSATAEWFTSPSESGYEADISFDSSSNTLSVTFTGYKADVVVQGNLSSVVNLKDVLPDWVEFGFSAATGDYYDVYALSSWSFNSSFHMEAHKGGSKRGLVIRLSLGIGAGILIVIFGVTFLVRWMLRTTGMEDASLFGHAMDNDFEKVSLPKKFSFEELGRATNNFARENKIGQGGFGAVYRGFVKELNTDVAIKKVSRESTQGMKEYISEVKIFGQLRHKNLVQLFGWCHQHEDLLLIYEFMENGSLDSYLFKGKGLLTWKVRYNIARGLASAMLYLHEEWEECVLHRDIKSSNVILARVMDHEIGSKTTVLAGTIGYLPPEAITRGKASRESDVYSFGVVALEIACGRKTVEANMVEDNIYLVDWVWKLYGMDELLKASDPSLYRHFDEKEMETLLIIGLWCTHTDYLQRPTMRQAVQVLSFEVPMPTLTPRVPIL 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03383 614 SMART serkin_6 342 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g03383 614 CDD lectin_legume_LecRK_Arcelin_ConA 31 262 IPR001220 GO:0030246
Vimu11g03383 614 FunFam L-type lectin-domain containing receptor kinase IX.1 327 418 - -
Vimu11g03383 614 ProSitePatterns Serine/Threonine protein kinases active-site signature. 462 474 IPR008271 GO:0004672|GO:0006468
Vimu11g03383 614 Gene3D - 29 273 - -
Vimu11g03383 614 SUPERFAMILY Protein kinase-like (PK-like) 326 600 IPR011009 -
Vimu11g03383 614 ProSitePatterns Legume lectins alpha-chain signature. 232 241 IPR000985 -
Vimu11g03383 614 ProSitePatterns Protein kinases ATP-binding region signature. 348 372 IPR017441 GO:0005524
Vimu11g03383 614 ProSiteProfiles Protein kinase domain profile. 342 607 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g03383 614 Pfam Legume lectin domain 30 265 IPR001220 GO:0030246
Vimu11g03383 614 Gene3D Transferase(Phosphotransferase) domain 1 419 610 - -
Vimu11g03383 614 FunFam Lectin-domain containing receptor kinase A4.3 419 614 - -
Vimu11g03383 614 Pfam Protein kinase domain 343 596 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g03383 614 Gene3D Phosphorylase Kinase; domain 1 327 418 - -
Vimu11g03383 614 ProSitePatterns Legume lectins beta-chain signature. 149 155 IPR019825 -
Vimu11g03383 614 PANTHER - 48 599 - -
Vimu11g03383 614 SUPERFAMILY Concanavalin A-like lectins/glucanases 29 263 IPR013320 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03383 Vimu-Chr11 54697130 54699006 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03383 21 613 Receptor kinase-like Gene Family AT5G10530 42.742 2.40e-155 459
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vimu11g03383 Pkinase 9.8e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03383 - - var:108318726 1145.57