Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03380 ATGCGATTTCCATCAACAAGGCTTGCAGATCATGAATTGTTCAGAGATAGTGATATTGCAGACACAGGTGAAATAGTGCATTATGCCTTACTTGCAGGGAGCATCATGTATGATACAATGTGTAGTAGACTGAATGTAGTGCATGATATTAGAGTGGTTAGAAGATCCATGATAAATCCTCAAAATGATCATTCAGAAGTTTTATCCTTAGTGGGTGATGCCATTACTGTAAAACCTGATGATCCTCTCGGTTGTCGTGCTTTTCCTGTAGGCTCAAGTGAATGTTTGCAATGTCGTGATGAAATATCTAAAGAGGCTTGCTTTGAGGACTCTATGAGGCGTCGTGGTGCTTTGTTGCAGTTCAATATCCCTAAGTTCAATATCCCTAACCTCCGTGTTGGAACCCTAGATTCTCTACTCTCTCTCAGTGATGACCTCACCAAGATAACTTGCCAATCTGCCGAAACTCTATTTTACTCTGATCTCGCTTTTCGATTTCCTCAACTCCTTCATCTGATATCTTCATTGACATCACAAGTCAGTGAAATGAAGGCAATGATGACACTTTTGTTGCAAAATCATCAAGGCTCATTGCCTTCACAACTTGCAGTATTTCAACGATCATCGGTATCTGATCAAGGGAGTGTGCCAAACAATGGATCATTTATGATTAGCCCTTCCACCTTCTTGCATTCAAATCTCAACATCCTCTTAAACAAGGACATTGATATTCGGAACCTACCTAACTCTACTAGCTTAGTTGTTTCTTGCGCTGAATATGACAAAGATAGCATGAATTGGAGAAATGTAGTAAAGAAAATTCAGTCTTTGGGACCTGGGTTCAAAGTAGAGAAGTGTCAAATAGGAATCCACATGCGAAGGATAAGGCAGCACCGGCGGAGTAATCCCTGGATTTCCGGCGGTTTTGAAAAAACCCCCGCTATTTCCGACGGTTCCAGAAGACCCCCGCTATTTCCGGCGGTTCTAGTAGACCCCCGCTATTTCCGGCGGACCCAGAAAACCCCCGCAATTTCTGGCGGTTTGAAAAGACTGCCGGTACTTACTTAG 1068 0.427 MRFPSTRLADHELFRDSDIADTGEIVHYALLAGSIMYDTMCSRLNVVHDIRVVRRSMINPQNDHSEVLSLVGDAITVKPDDPLGCRAFPVGSSECLQCRDEISKEACFEDSMRRRGALLQFNIPKFNIPNLRVGTLDSLLSLSDDLTKITCQSAETLFYSDLAFRFPQLLHLISSLTSQVSEMKAMMTLLLQNHQGSLPSQLAVFQRSSVSDQGSVPNNGSFMISPSTFLHSNLNILLNKDIDIRNLPNSTSLVVSCAEYDKDSMNWRNVVKKIQSLGPGFKVEKCQIGIHMRRIRQHRRSNPWISGGFEKTPAISDGSRRPPLFPAVLVDPRYFRRTQKTPAISGGLKRLPVLT 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03380 355 Pfam V-ATPase subunit C 122 152 IPR004907 GO:0033180|GO:0046961|GO:1902600
Vimu11g03380 355 SUPERFAMILY Vacuolar ATP synthase subunit C 123 152 IPR036132 GO:0015078|GO:0033180|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03380 Vimu-Chr11 54650924 54659342 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03380 121 148 Primary Pumps ATPases(2) AT1G12840 73.333 5.81e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03380 - - vum:124829484 84.3445