Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03379 AGAGTTGACATTTTCTCAAACGAGTGCGACCCTCGGGACCCACATGTTGGGGTGAATGTAAACTCTATTCGCTCTGAGGTAGTTGAGAATTGGAGAACAGATACTACTTCAAGAGGCCCTTATAAGTGTACCATTAAGTACCACTCCCAAGATCATTGTTTGAACATTTCTTTCACTGGAATCTTGCCCAATGGAAAGCAAGTAACACAACACCTTCTTTACCACATTGATTTGGGAAACTACTTAGAAGAGATGGTTGTTGTAGGTATATTAGCTGCAACAGGAGATGGATTTGATCAGTATACCTTGCTCGAATGGTCATTTAGTAAAGTAACAAGTAATGATAAGAAAGAGTTCGACAAGACTATATTAGGGGCGGGAAAGAAAAGGAAGAAGCCACTTCAGAAAATGGGCACTGGACCTAAGGAGATCAGATACGAGGTTTTGGTATCTGCGACAAACAACTTTAAAGAGAGACACAAGCTGAGGAAATGTGTTTACAGAGGTTATTTCAAAGACATAAAGACTTATGTTGCAATACAGAGAATATCAGCTGGTTCATCACATGGTGTGAATGAATATGCAGCGGAAGTAAGGATCATTAGCCAATTGAGGCACAGGAATTTGGTGAAACTCATCGGTTGGTGCCATAAGAACAATGATCTCTTTCTGATATATGACTACATGCCAAATGACAGCTTGTATTCTCATCTTTTTCATAGGGAGAGTATCTTATCGTGGCATGTGAGGTACAACATAGCTCTAGGCTTGGCCTCAGCATTGTTTTACCTACAAGAAGAGTGTGAAAAATGTGTGTTTCATAGGGACATCAAATCAAGCAACATAATGTTAGACTCTAATTTTAGTGCTAAGCTTGGGAATTTTGGCCTGGCAAGGCTTGAGGGTCCTAAGAAAGGGTCAAAAATACCAGTTATGGCTGGAACAACGGGTTACCTTGACCCAGAATATATTATCACAGGCAAGGCTAGAAAGGAAACTGAAATGTTCAGCTTTGGGGTTATTTTGTTGGAGGTAGCAAGTGGAAGAAAAGCCATTCACCAAGAAGAGAAAGAGGGTCAACCTCAAGTATCACTAGTTGAGTGGGTGTGGGAGCTCTATAGACTTAGAAATCTCCTTGCAGCAGCTGATCCAAACCTGAATGGGGAATTTGATGTGCAGCAAATGGAATGCTTGCTTGTTGTTGGTATTTGGTGTGCTAATTCAGATAGCAAGACAAGGCCCTCTATAAGGCAAGTGATTAAGGTGCTTAACTTTGAAGCTCCTTTTCCTGTTCTCCATCACCACCTATCTCCCTCCAACAACAACAGATGA 1332 0.4114 RVDIFSNECDPRDPHVGVNVNSIRSEVVENWRTDTTSRGPYKCTIKYHSQDHCLNISFTGILPNGKQVTQHLLYHIDLGNYLEEMVVVGILAATGDGFDQYTLLEWSFSKVTSNDKKEFDKTILGAGKKRKKPLQKMGTGPKEIRYEVLVSATNNFKERHKLRKCVYRGYFKDIKTYVAIQRISAGSSHGVNEYAAEVRIISQLRHRNLVKLIGWCHKNNDLFLIYDYMPNDSLYSHLFHRESILSWHVRYNIALGLASALFYLQEECEKCVFHRDIKSSNIMLDSNFSAKLGNFGLARLEGPKKGSKIPVMAGTTGYLDPEYIITGKARKETEMFSFGVILLEVASGRKAIHQEEKEGQPQVSLVEWVWELYRLRNLLAAADPNLNGEFDVQQMECLLVVGIWCANSDSKTRPSIRQVIKVLNFEAPFPVLHHHLSPSNNNR 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03379 443 SMART serkin_6 156 429 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g03379 443 FunFam Lectin-domain containing receptor kinase A4.3 229 441 - -
Vimu11g03379 443 Pfam Protein kinase domain 166 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g03379 443 Gene3D Transferase(Phosphotransferase) domain 1 229 437 - -
Vimu11g03379 443 Gene3D Phosphorylase Kinase; domain 1 141 228 - -
Vimu11g03379 443 SUPERFAMILY Protein kinase-like (PK-like) 140 428 IPR011009 -
Vimu11g03379 443 Gene3D - 1 126 - -
Vimu11g03379 443 PANTHER - 7 426 - -
Vimu11g03379 443 SUPERFAMILY Concanavalin A-like lectins/glucanases 3 109 IPR013320 -
Vimu11g03379 443 ProSiteProfiles Protein kinase domain profile. 131 436 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g03379 443 ProSitePatterns Serine/Threonine protein kinases active-site signature. 272 284 IPR008271 GO:0004672|GO:0006468
Vimu11g03379 443 Pfam Legume lectin domain 3 120 IPR001220 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03379 Vimu-Chr11 54639105 54640509 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03379 3 432 Receptor kinase-like Gene Family AT5G10530 43.368 2.24e-121 366
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vimu11g03379 Pkinase 1.2e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03379 - - cam:101492002 478.018