Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03378 ATCGCCTTCTTTCTGGCACATCCGGGCTTTCCATCGCTTTCCCCCAGAGATGGAGCTGGTATTGGTCTTGCCAGCCGTGATCAACTCAGAAATCAAAGCTACAAAGTGGATCATCCATTTGTGGCAGTGGAATTTGATACCTTCGTTAATGAATGGGATCCTCAGTCGTATCCCCATGTGGGTATCGATATCAATTCAATCGTATCTTCTGCGGCTGCAGAGTGGTTCACCAGCGGGTCTGAGAGTGGATACGAGGCTGATATTAGTTTCGATTCCAGTTCAAACAAATTAAGTGTCACCTTTACTGGGTATAAGGCGGACGTCGTAGTTCAAGGGAACTTATCCTCTGTGGTCAATCTGAAAGATGTCTTACCTGATTGGGTTGAATTTGGCTTTTCTGCAGCAACAGGAGATTATTACGACGAATATGCGCTTAGCTCATGGTCCTTCAACTCTAGTTTTGACACGGAAGCACATAAGGGTGGAAGCAAAAGAGGGCTTGTGATAGGGCTGAGCCTTGGACTTGGTGCAGGTATTTTAATTGTTATTGTGGGGGTAACTTTTCTTGTGAGATGGATGCTGAGGACTACGGGTATGGAAGATGCCTCACTTTTTGATCATGCCATGGACAATGATTTCGAAAAAGTCTCTCTACCCAAGAAGTTTTCCTTTGAAGAACTGGCCAGAGCAACTAATAACTTCGCTAGAGAAAACAAAATAGGACAGGGAGGTTTTGGGGCGGTCTACAGGGGATTTATTGAAGAGTTGAACACCGATGTTGCCATCAAGAAGGTATCTCGTGAATCTACACAAGGGGTGAAGGAGTACATATCTGAAGTAAAGATCTTTGGTCAACTCAGGCATAAGAATTTGGTTCAACTCTTTGGGTGGTGCCATCAGCATGAGGACCTGCTGCTGATTTATGAGTTCATGGAAAATGGAAGCTTGGATTCTTATCTGTTCAAGGGAAAAGGCCTGCTGACATGGAAAGTGAGATATAATATTGCGAGAGGTTTGGCTTCAGCAATGTTATACCTGCATGAAGAGTGGGAAGAATGTGTGCTTCATAGAGACATAAAATCCAGCAATGTTATGTTGGATTCCAATTATAATGCAAAGCTTGGAGATTTTGGGTTAGCCAGAGTAATGGATCATGAGATAGGATCAAAAACAACTGTTTTAGCAGGAACAATTGGGTATTTGCCTCCTGAAGCTATCACAAGAGGCAAGGCTAGTAGGGAGTCCGATGTGTACAGCTTTGGAGTTGTTGCTTTGGAGATAGCCTGTGGTAGAAAGACTGTTGAAGCTAATATGGTAGAAGATAATATTTATTTGGTAGATTGGGTTTGGAAACTCTATGGCATGGATGAACTCCTCAAAGCCTCTGATCCAAGCTTATATAGACACTTTGATGAGAATGAAATGGAGACTTTACTGATAGTTGGCCTTTGGTGCACTCACACAGATTACCTTCAGAGGCCTACTATGAGACAAGCAGTTCAAGTGCTTAGTTTTGAAGTACCAATGCCCACACTCACACCACGGGTGCCCATTCTCTGA 1560 0.4346 IAFFLAHPGFPSLSPRDGAGIGLASRDQLRNQSYKVDHPFVAVEFDTFVNEWDPQSYPHVGIDINSIVSSAAAEWFTSGSESGYEADISFDSSSNKLSVTFTGYKADVVVQGNLSSVVNLKDVLPDWVEFGFSAATGDYYDEYALSSWSFNSSFDTEAHKGGSKRGLVIGLSLGLGAGILIVIVGVTFLVRWMLRTTGMEDASLFDHAMDNDFEKVSLPKKFSFEELARATNNFARENKIGQGGFGAVYRGFIEELNTDVAIKKVSRESTQGVKEYISEVKIFGQLRHKNLVQLFGWCHQHEDLLLIYEFMENGSLDSYLFKGKGLLTWKVRYNIARGLASAMLYLHEEWEECVLHRDIKSSNVMLDSNYNAKLGDFGLARVMDHEIGSKTTVLAGTIGYLPPEAITRGKASRESDVYSFGVVALEIACGRKTVEANMVEDNIYLVDWVWKLYGMDELLKASDPSLYRHFDENEMETLLIVGLWCTHTDYLQRPTMRQAVQVLSFEVPMPTLTPRVPIL 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03378 519 ProSiteProfiles Protein kinase domain profile. 234 512 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g03378 519 PANTHER - 2 504 - -
Vimu11g03378 519 FunFam Lectin-domain containing receptor kinase A4.3 311 519 - -
Vimu11g03378 519 SUPERFAMILY Concanavalin A-like lectins/glucanases 1 154 IPR013320 -
Vimu11g03378 519 SMART serkin_6 234 505 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g03378 519 FunFam L-type lectin-domain containing receptor kinase IX.1 219 310 - -
Vimu11g03378 519 ProSitePatterns Serine/Threonine protein kinases active-site signature. 354 366 IPR008271 GO:0004672|GO:0006468
Vimu11g03378 519 ProSitePatterns Legume lectins beta-chain signature. 41 47 IPR019825 -
Vimu11g03378 519 SUPERFAMILY Protein kinase-like (PK-like) 218 505 IPR011009 -
Vimu11g03378 519 Pfam Legume lectin domain 1 158 IPR001220 GO:0030246
Vimu11g03378 519 ProSitePatterns Protein kinases ATP-binding region signature. 240 264 IPR017441 GO:0005524
Vimu11g03378 519 ProSitePatterns Legume lectins alpha-chain signature. 124 133 IPR000985 -
Vimu11g03378 519 Gene3D Phosphorylase Kinase; domain 1 219 310 - -
Vimu11g03378 519 Gene3D Transferase(Phosphotransferase) domain 1 311 515 - -
Vimu11g03378 519 CDD STKc_IRAK 240 503 - -
Vimu11g03378 519 Gene3D - 1 166 - -
Vimu11g03378 519 Pfam Protein kinase domain 235 501 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03378 Vimu-Chr11 54592281 54594257 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03378 2 518 Receptor kinase-like Gene Family AT5G10530 48.295 6.38e-158 462
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vimu11g03378 Pkinase 7.1e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03378 - - var:108318726 980.704