Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03367 ATGTTCTTTAGGCCAAACTCTGTCTTTCCTTTTTCTTCCTCTTCCTTTTTCTCTGCTCTCCAACAAGCTCACAACACCAATAATTTAGTCCCACAAGAGATGTCTTCTCTCTGGTTTCTTAAACTCATTGTCAAATGCCTTGATCATTGTGCATGGCCTCTTCTTGCTCTGGGGTACCCTTTATGTGCTTCTGTACAAGCAATTGAGACCGAATCCTATAAAGCAACTAAGGATTTGATATCGTATTGGATACTCCTCTCGCTAATATACCTATTTGAATATGCATTTTTTAGGCTTCTTCAATGGTACCAGTTCTGGCCTTACACTAAGCTAATGATCATCTTCTGGCTCATTGTGCCAGACTTTGGACGGGCATCTTATGCCTACAATAATATTATTCGAACATGCATCTCCAACCCACAAGCAATCATAAGTAGTTTAAATAACTGGAGGAAGATTTCTGTCAAGAAAGATAACTTTTTACTGCATGCAGATAGATATTTAGAAGAGAATGGAACAGAAGCCTTAATGAAACTCATTGCTAGCAAGAACACTACTAACAAACCTGTTGCACAAGCAACAAATGCAAGTATAGTTACTGACCATGAAGAGATGCAACAGACAAATGTGAAAAAGCTCCAAACAGAGCCAAAAGCCACCAAAGATTTGGAGGTGATTGAGAAAAAGGAAATTCCTACAGGCAATCAAAATATTCCTGTGGCGCCTAAACTTGTGCAAAGTGAGAATGTTTCAGCAACCATGTTGGAAACTAATGGAATAGTGATCAAAGAGAAAGGTGTTGAAGAACTTCCTCAGATTTTTACACATAAGGAAGTTCAGAAGGAGTGGACTTGCGCTTTATGCCATGTAACAACAACGAGCCAGAAAACCTTGAATTCACACCTGCAAGGGAGCAAACACAGGAATATGGAGATTGCTCTGAAGGCAAAGAATCAACCTGTTTCACAGAAGCTGAAAAGTGATCACTCCAAAGAGGAATTGAAACAGAAGAACATTTATCAGCCAAAATTAAAGACCAAGAATGGAGAGAAACCTACTGGGACGAATAATTCAGAAATAAGATGTGAAATCTGTAATGTGAAATGCCCTTGCGAGATTACCTTGGCCTCTCATAGAAAAGGGAAGAAGCATTTGGCTAAAGTTCAAAGTTTAATCTGA 1179 0.3893 MFFRPNSVFPFSSSSFFSALQQAHNTNNLVPQEMSSLWFLKLIVKCLDHCAWPLLALGYPLCASVQAIETESYKATKDLISYWILLSLIYLFEYAFFRLLQWYQFWPYTKLMIIFWLIVPDFGRASYAYNNIIRTCISNPQAIISSLNNWRKISVKKDNFLLHADRYLEENGTEALMKLIASKNTTNKPVAQATNASIVTDHEEMQQTNVKKLQTEPKATKDLEVIEKKEIPTGNQNIPVAPKLVQSENVSATMLETNGIVIKEKGVEELPQIFTHKEVQKEWTCALCHVTTTSQKTLNSHLQGSKHRNMEIALKAKNQPVSQKLKSDHSKEELKQKNIYQPKLKTKNGEKPTGTNNSEIRCEICNVKCPCEITLASHRKGKKHLAKVQSLI 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03367 392 SMART c2h2final6 283 307 IPR013087 -
Vimu11g03367 392 SMART c2h2final6 360 384 IPR013087 -
Vimu11g03367 392 Pfam Zinc-finger of C2H2 type 283 307 - -
Vimu11g03367 392 Pfam Zinc-finger of C2H2 type 361 384 - -
Vimu11g03367 392 Gene3D Classic Zinc Finger 337 390 - -
Vimu11g03367 392 Gene3D Classic Zinc Finger 262 312 - -
Vimu11g03367 392 SMART ZnF_U1_5 357 391 IPR003604 GO:0003676|GO:0008270
Vimu11g03367 392 SMART ZnF_U1_5 280 314 IPR003604 GO:0003676|GO:0008270
Vimu11g03367 392 MobiDBLite consensus disorder prediction 319 355 - -
Vimu11g03367 392 Pfam TB2/DP1, HVA22 family 60 135 IPR004345 -
Vimu11g03367 392 MobiDBLite consensus disorder prediction 322 340 - -
Vimu11g03367 392 PANTHER HVA22-LIKE PROTEINS 40 170 IPR004345 -
Vimu11g03367 392 SUPERFAMILY beta-beta-alpha zinc fingers 349 391 IPR036236 -
Vimu11g03367 392 SUPERFAMILY beta-beta-alpha zinc fingers 277 319 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03367 Vimu-Chr11 54483600 54486456 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03367 254 391 C2H2 Transcription Factor Family AT2G19380 29.577 7.39e-06 46.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vimu11g03367 TB2_DP1_HVA22 7e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03367 - - pvu:PHAVU_002G214600g 570.466
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g03367 11 54483600 54486456 Vimu11g03367 11 54483600 54486456 ECH