Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03354 ATGGATACAGTGAATAATCGCAGCCAAAACGGGGAAGAGCAGCCTCCGCCGCCAGGGACTGCGCTTGCTATGCAGGTGGTCCATTACTCCAATGGTTCCTATGAAGGGGAAGAAGCAGCCACTCCACTTGGCCATGCTTCAACTGCTATGCACGCCCGAACCAGTGAACTCACCATTTCCTTTGAGGGTGAAGTTTATGTTTTCCCTGCTGTTACCCCACAAAAGGAAATAAATGATCCTTCCCGATGTTCAAAGCTTTCCCGAAGAATTGCCTCACTTGTTAGGTTTCGTGAAAAACGAAAAGAGAGATGTTTTGAGAAGAAAATCCGATACACGTGCCGTAAAGAGGTTGCCCAGAGGTAG 363 0.4821 MDTVNNRSQNGEEQPPPPGTALAMQVVHYSNGSYEGEEAATPLGHASTAMHARTSELTISFEGEVYVFPAVTPQKEINDPSRCSKLSRRIASLVRFREKRKERCFEKKIRYTCRKEVAQR 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03354 120 MobiDBLite consensus disorder prediction 1 21 - -
Vimu11g03354 120 MobiDBLite consensus disorder prediction 1 15 - -
Vimu11g03354 120 Pfam tify domain 53 75 IPR010399 -
Vimu11g03354 120 ProSiteProfiles CCT domain profile. 89 120 IPR010402 GO:0005515
Vimu11g03354 120 Pfam CCT motif 89 119 IPR010402 GO:0005515
Vimu11g03354 120 PANTHER GATA TRANSCRIPTION FACTOR 28 80 120 IPR045280 GO:0006355
Vimu11g03354 120 ProSiteProfiles Tify domain profile. 50 85 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03354 Vimu-Chr11 54305929 54312710 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03354 55 120 Tify Gene Family AT1G51600 41.237 1.00e-15 69.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Vimu11g03354 CCT 1.8e-10 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03354 - - gmx:102669848 150.984