LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu11g03332	ATGACTAGAAAGAGGATACAGATCAAGAAAATCGACAACATCAGTTCGAGGCAGGTGACTTTCTCCAAGAGAAGAAAAGGGCTTTTCAAGAAGGCTCAGGAGTTGTCAACCCTTTGTGATGCAGACATAGCTCTCATAGTCTTTTCTGCAACTAGCAAGCTTTTTGATTATGCCAGTTCAAGTATGCAACAAGTAATTGAAAGGCGCGATCGTCATTCAGCAATGCATAGATTGGATCGTCCTTCTATGGAACTGCAGGGTTTTGATCTTGGTATGCTGCCACATGCTATTCTGCGCACGTCTGATGATGATGATGATACCATTATGGGGAATGTGTTTGATTATGACGTTAAGGATAACAACACAGTAGTTAATGTTGCTTCTCTGACATCGTTAATGTCATCAAATCGGGGATTCATCCCAATTGTAACATGGAAGCACTTATGTAGGTTTCAAATTTATGCACAGATTGAGAGTGACTCCAACGACATCCTGCGCAAGAAAGTAGAAGATAAGAATCGTGAATTGAGGCAGTTGAATGGAGAAGATCTGCAAGGATTGACACTGCAAGAACTGCAGAAAATTGAGGAAAATCTTAAAAGGGGTTTGACAAATGTTTCAAAAGTAAAGGATGATAAAGTTATGCAAGAGATCAGAAACCTTAAAAGAAAGGGCCACCGAGCCCCTCAAGGGATCCGTCCCTCATGGCCACCGAGCCCCTCAAGGGATCTGTCCCTCATGGCCACCGAGTCCCTCAAGGGATCCGGAATGGAACTAATGGAGGAAAACCAAAGATTGAAACAGGTACCAAGCCTTATCCAGTTACACAGGCAATCATCGGAATCCATTATTAGCAATTCATCTAATCTTCCTGAAGATGGTTATAGTGACACATCTCTCAAGTTGGGGTTACCTTAA	918	0.4237	MTRKRIQIKKIDNISSRQVTFSKRRKGLFKKAQELSTLCDADIALIVFSATSKLFDYASSSMQQVIERRDRHSAMHRLDRPSMELQGFDLGMLPHAILRTSDDDDDTIMGNVFDYDVKDNNTVVNVASLTSLMSSNRGFIPIVTWKHLCRFQIYAQIESDSNDILRKKVEDKNRELRQLNGEDLQGLTLQELQKIEENLKRGLTNVSKVKDDKVMQEIRNLKRKGHRAPQGIRPSWPPSPSRDLSLMATESLKGSGMELMEENQRLKQVPSLIQLHRQSSESIISNSSNLPEDGYSDTSLKLGLP	305

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu11g03332	305	MobiDBLite	consensus disorder prediction	280	295	-	-
	Vimu11g03332	305	Coils	Coil	162	182	-	-
	Vimu11g03332	305	MobiDBLite	consensus disorder prediction	280	305	-	-
	Vimu11g03332	305	ProSiteProfiles	MADS-box domain profile.	1	61	IPR002100	GO:0003677\|GO:0046983
	Vimu11g03332	305	CDD	MADS_MEF2_like	3	77	IPR033896	GO:0000977\|GO:0045944
	Vimu11g03332	305	ProSiteProfiles	K-box domain profile.	155	278	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Vimu11g03332	305	Gene3D	-	13	81	IPR036879	GO:0003677\|GO:0046983
	Vimu11g03332	305	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	10	57	IPR002100	GO:0003677\|GO:0046983
	Vimu11g03332	305	SMART	madsneu2	1	60	IPR002100	GO:0003677\|GO:0046983
	Vimu11g03332	305	PRINTS	MADS domain signature	23	38	IPR002100	GO:0003677\|GO:0046983
	Vimu11g03332	305	PRINTS	MADS domain signature	3	23	IPR002100	GO:0003677\|GO:0046983
	Vimu11g03332	305	PRINTS	MADS domain signature	38	59	IPR002100	GO:0003677\|GO:0046983
	Vimu11g03332	305	MobiDBLite	consensus disorder prediction	221	243	-	-
	Vimu11g03332	305	ProSitePatterns	MADS-box domain signature.	3	57	IPR002100	GO:0003677\|GO:0046983
	Vimu11g03332	305	FunFam	Transcription factor, MADS-box	13	82	-	-
	Vimu11g03332	305	PANTHER	SERUM RESPONSE FACTOR HOMOLOG	3	242	-	-
	Vimu11g03332	305	Pfam	K-box region	164	226	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Vimu11g03332	305	SUPERFAMILY	SRF-like	2	79	IPR036879	GO:0003677\|GO:0046983

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu11g03332	Vimu-Chr11	53904105	53921008	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu11g03332	1	86	MADS-box Gene Family	AT2G22540	64.368	1.40e-34	124

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-MIKC	Vimu11g03332		K-box	1.1e-12	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu11g03332	-		-	pvu:PHAVU_002G212500g	184.111

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vimu11g03332	11	53904105	53921008	Vimu2g00458	2	2601477	2611801	PCT