Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03327 TTGGTGACTGAGGCCCATTGGACGATTTTTGAACGCTTGGAGCTTTTCTTGAGTGATTCTCCTGCAAGGGTGTTGGTGGACGGTGATTGGGGCACTTATTGCGGCTGTTGTGCAGTAGGGAGGGTGTTGCCGGTGGGATTGCATTACGTCACAACTTCTTCACCTCTCGTTCAACCACATTTCATTTTGATTCACTGCCTCGCATCTTCACCATTTTCTCTCGAGAGCCTCTCAACCATCCACATTTTCTTCACAGATACACAGGGTTTAGCATTATCTTCAATTGGTGAATATAAGAAAGCTGAGGATGCACATCTAAAATCACTTCAAATTGATAGAAATTTTCTTGAAGCATGGGCGCACCTGACTCAGGCATCTATCAACCTTATTGTCAAGGATTATGATGCTGCTCTAGATTTGGAATTGGACTCAATGGATAAGTTTGTGCTTCAGTGCCTTGCCTTCTACCAGGTTGCTGCTTTGACAACTATTGACATGGTGATAGCTTCTTTTCCATTTCTCCCACTTGCGGCTGAGCGTCCTCTCTTCTCACCTTCACTACCTTCAACTTCGTCGTCCAGCACCGTTGTCCAACGTCGTCGTCTAGCACCGCCGTCGTCTCCGCTTGATTCATCTCTCTTGAATCCAATCCAAGGAACCTATGGTTGCTTTCGATTACACCCCACCGACAAAGAGCTAGTCGTGTTCTACCTGAACCTGAAGCGCAAGATCACCGGAAACCTGTCCCAATACGACCATATCGCAGTGGTTGATGTCTACAAGCTTAACCCTGGGACCTTCCCCGTGAGAATTTTGCCCTTTTTTGTGGTAATGAAAGGACTTGGAATGGTACTTCTTCAACGTGATGGACCTCAAGTATGGAAATGGCTCCAGGACCAACCGCGCCACCGAGAAGGGCTACTGAAAGACAACTGGAAAGGACCGTCGTCTGGCCCATGA 960 0.474 MVTEAHWTIFERLELFLSDSPARVLVDGDWGTYCGCCAVGRVLPVGLHYVTTSSPLVQPHFILIHCLASSPFSLESLSTIHIFFTDTQGLALSSIGEYKKAEDAHLKSLQIDRNFLEAWAHLTQASINLIVKDYDAALDLELDSMDKFVLQCLAFYQVAALTTIDMVIASFPFLPLAAERPLFSPSLPSTSSSSTVVQRRRLAPPSSPLDSSLLNPIQGTYGCFRLHPTDKELVVFYLNLKRKITGNLSQYDHIAVVDVYKLNPGTFPVRILPFFVVMKGLGMVLLQRDGPQVWKWLQDQPRHREGLLKDNWKGPSSGP 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03327 319 PANTHER SUPPRESSOR OF RPS4-RLD 1 89 125 IPR044650 GO:0045892
Vimu11g03327 319 SUPERFAMILY TPR-like 89 144 IPR011990 GO:0005515
Vimu11g03327 319 SUPERFAMILY NAC domain 218 269 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03327 Vimu-Chr11 53757242 53765579 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03327 203 278 NAC Transcription Factor Family AT3G10480 38.158 6.57e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03327 - - vum:124826397 77.4109