Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03310 ATGGAGCTGAATCACAGAAAGTTACTTGAGCTTCCAGATACTCCTGGTTACGTCAAAGGAAGTCCCAACAATAACCACAAAACCACATTCTTGATCGTCGGTTTTTCCGTTGTAGCCGCCGTTTTCGTTGTCATCTGCTCCTACGCCATCTATGTCAAGTTTTTCTCTCCTAGGAACAGGTCTGTGAGGAGAAGCTTGTCACGGCCTCAAACTGAGGAAGATTTCTTGGACGAAGAAGCACATGGCCCTGTGGTTGACCACCCCATCTGGTACATCCGCACCACCGGCCTCCAACAATCAGTGATCGGTTCCATCACCGTTTGCAAGTACAAGAAAGATGAAGGCTTGATTGAAGGGTCGGAATGTTCCGTTTGTTTGAGCGAGTTTGAAGAGGACGAAAGTCTCAGGCTTTTGCCTAAGTGTAACCACGCTTTTCACTTGCCTTGCATTGACACCTGGCTTAGATCGCACACCAATTGCCCCATGTGCCGTGCTCCTATTGTTACTGACCCCACAAGGGTTCCTTCCATGGACCCCAATGCTTTTGTGGAAGTGGAGAGTGGTGGTGGAGAAGAACATAATCATGTTCAAGCTCAAGCTCAACCCCAACATGGTGATGATTTGTTGAGGGGTGAGGAAGAGGGAGAAGTTGAAGTGTGTGAAACTGAGAACATGGCTCCAGAAGTGGTCGCTGTGCAACCAAGAAGATCAGTGTCTCTTGATTCTTCTTCTGCTGCTAAGATCAGTCTTGCTCTTGCTACTGTTGTGTCAGGAGATTCTCATGGAAATAATTCAAAGAGAATTAAAGGTGGTTGCAGTTCTTCTTCTTCTTCCATCAAAAGGTCACGATCCTTCAATGCCAAGCACTTAATATCATGGTATGGGCGCAGCCAGAGAAAGGCAAATGCTCCATTAAGAAGCTTCTGA 927 0.4682 MELNHRKLLELPDTPGYVKGSPNNNHKTTFLIVGFSVVAAVFVVICSYAIYVKFFSPRNRSVRRSLSRPQTEEDFLDEEAHGPVVDHPIWYIRTTGLQQSVIGSITVCKYKKDEGLIEGSECSVCLSEFEEDESLRLLPKCNHAFHLPCIDTWLRSHTNCPMCRAPIVTDPTRVPSMDPNAFVEVESGGGEEHNHVQAQAQPQHGDDLLRGEEEGEVEVCETENMAPEVVAVQPRRSVSLDSSSAAKISLALATVVSGDSHGNNSKRIKGGCSSSSSSIKRSRSFNAKHLISWYGRSQRKANAPLRSF 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03310 308 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 97 171 IPR013083 -
Vimu11g03310 308 SMART ring_2 122 163 IPR001841 -
Vimu11g03310 308 SUPERFAMILY RING/U-box 113 171 - -
Vimu11g03310 308 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 22 172 IPR044675 -
Vimu11g03310 308 MobiDBLite consensus disorder prediction 259 280 - -
Vimu11g03310 308 CDD RING-H2_EL5-like 121 164 - -
Vimu11g03310 308 ProSiteProfiles Zinc finger RING-type profile. 122 164 IPR001841 -
Vimu11g03310 308 FunFam RING-H2 finger protein ATL54 97 170 - -
Vimu11g03310 308 Pfam Ring finger domain 121 164 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03310 Vimu-Chr11 53393416 53396041 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03310 39 206 C3H Transcription Factor Family AT1G72220 48.571 3.06e-49 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03310 - - vra:106767242 538.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g03310 11 53393416 53396041 Vimu11g03310 11 53393416 53396041 ECH