Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03296 ATGGAAACACCACAATACCATCCTCTGCATGGAACCATCGAGTCACGTTGCTTAATCACTCTTACGCTTGTTCGTCCACAACATGAGCTTTTGCAAACTAACCCACAAGTTTTAACCACAGCTGAAGGTGATGACACCAAGTCGATAGAAATGAGTGTAAGAGTTCAGGGAGCGAAGGAGGACATAACAGTGACATGGGAGAATTTGTGGGTCACTGTTTCAAGTGGAAAGACAAAGAAGCCAATTCTGCAGGATCTTACAGGTTATGCTAGCCCAGGGAGGATTCTGGCCATAATGGGCCCTTCAGGATGTGGAAAATCTACACTTCTTGATTGTTTGGCAGGAAGATTGAGCTCACAAATGAAGCATTCAGGGAAGATTCTAATCAATGGCCAGAAACAAACACTGGCCTATGGGACATCAGGCTATGTAACACAAGAAGATGCTATGCTGTCAACTTTAACAGCTGGGGAAACTTTATACTACTCTGCTCAACTTCAGTTTCCAGATTCCATGTCCACAGCAGAGAAGAAGGAACAGGCAGATATCACACTCAGAGAAATGGGTCTGCAAGGTGCCATTAACACAAGGGTTGGAGGGTGGGGTTCTAAAGGTCTGAGTGGGGGACAAAAGAGGAGACTTAGCATCTGCATTGAGATTCTAACACGGCCAAGACTCCTTTTCCTTGATGAACCAACAAGTGGACTTGATAGTGCAGCTTCCTATTATGTTATGAGTAGAATTGCAACTCTAAATCTAAGAGATGGAATTCGAAGGACTATTGTTACTTCCATCCATCAGCCAAGTAGTGAAGTCTTTGAACTTTTTCATGATCTCTGTCTTCTGTCTTCAGGCGAAACTGTATATTTTGGTCCAGCCTCTGGTGCAAATCAGTTTTTTTCTTCAAACGGTTTCCCATGCCCAACTCTCCACAATCCTTCTGATCACTACTTAAGGATCATAAATAAAGATTTCGAACAGGATGCTGAAGAAGGCTTTGGTAAGGGAGTAAGTACAGAAAAAGCAATCGAAACCCTTGTAAAGTCTTACAGGTTGTCTCAAGTAAGAAAACAAGTTAAAAGTGAAGTGAAAAAAATAATTGAAAGTGATTCTTGTGAAACAAGGAAGAACAGGACTCATGCTGCATTTCCTACTCAATGCCTTGTTCTTACAAGAAGATCATCATTGCAATTCTTTCGTGACATAAGCAATTACTGGCTACGTCTAATTGTCTTTACTGTAATAGCTATAAGCATTGGATCTATGTTCTATAACATAGGCACAGACGACGGATCTATTCAGGGGAGAGGTTCTCTGCTCATATTTTTTGTTTCAGTTCTGACTTTCATGACCCTTGTCGGTGGATTTTCTCCACTCTTGGAGGAAATGAAGGTATTTGGACGAGAGAGATTGAATGGGCACTATGGTGTGACAGCATTTCTGATAGGCCAGACATTCTCTGCTGTTCCTTACATGGTACTGATCTCTGTTATTCCTGGAGGAATAGTGTACCACCTTTGTGGATTGCACAAGGGAATAGATCGTTTCTTCTACTTCACTTGTTTGCTATTTTCCATAGTGATGTGGGTTGAGAGTCTCATGTTGGTGATCGGTAGCATGTGCCCCAACTATGTAATAGGAATGTTCCTTACCGGTGGAGTTGAAGGACTCATGATTCTAACAGGTGGATTCTACAGACTGCCAAATGATCTTCCGAAGCCATTGTGGAAGTACCCTTTCTACTATGTTTCATTCCTCAAATATGCCTTCCAAGGATCCTTCAAGAATGACTTTGATGGCCTAACATTTTCGGTGAACCTAGAAGGAGGAGGCACCGCAAGCATTAGTGGTAGAGAAGTTCTATCAGAAACATGGCATCTGGAAATGGGTCACTCTAAGTGGGTTGATCTTGCAATCATGTTTGGAATGATTTTTCTGTATCGAGTTCTGTTCTTGCTCGTCACTAAGTTGAAGGAAAAGTTCAAGCCTTTTCTTGCTTCCATTACTCTTCGACCATGA 2019 0.42 METPQYHPLHGTIESRCLITLTLVRPQHELLQTNPQVLTTAEGDDTKSIEMSVRVQGAKEDITVTWENLWVTVSSGKTKKPILQDLTGYASPGRILAIMGPSGCGKSTLLDCLAGRLSSQMKHSGKILINGQKQTLAYGTSGYVTQEDAMLSTLTAGETLYYSAQLQFPDSMSTAEKKEQADITLREMGLQGAINTRVGGWGSKGLSGGQKRRLSICIEILTRPRLLFLDEPTSGLDSAASYYVMSRIATLNLRDGIRRTIVTSIHQPSSEVFELFHDLCLLSSGETVYFGPASGANQFFSSNGFPCPTLHNPSDHYLRIINKDFEQDAEEGFGKGVSTEKAIETLVKSYRLSQVRKQVKSEVKKIIESDSCETRKNRTHAAFPTQCLVLTRRSSLQFFRDISNYWLRLIVFTVIAISIGSMFYNIGTDDGSIQGRGSLLIFFVSVLTFMTLVGGFSPLLEEMKVFGRERLNGHYGVTAFLIGQTFSAVPYMVLISVIPGGIVYHLCGLHKGIDRFFYFTCLLFSIVMWVESLMLVIGSMCPNYVIGMFLTGGVEGLMILTGGFYRLPNDLPKPLWKYPFYYVSFLKYAFQGSFKNDFDGLTFSVNLEGGGTASISGREVLSETWHLEMGHSKWVDLAIMFGMIFLYRVLFLLVTKLKEKFKPFLASITLRP 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03296 672 Pfam ABC transporter 83 234 IPR003439 GO:0005524
Vimu11g03296 672 Pfam ABC-2 type transporter 385 596 IPR013525 GO:0016020|GO:0140359
Vimu11g03296 672 Gene3D - 62 393 IPR027417 -
Vimu11g03296 672 ProSitePatterns ABC transporters family signature. 206 220 IPR017871 GO:0005524|GO:0016887
Vimu11g03296 672 SMART AAA_5 92 285 IPR003593 GO:0016887
Vimu11g03296 672 FunFam ABC transporter G family member 11 62 349 - -
Vimu11g03296 672 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 56 668 - -
Vimu11g03296 672 Pfam ABC-2 type transporter 266 325 IPR043926 GO:0140359
Vimu11g03296 672 CDD ABCG_EPDR 62 291 - -
Vimu11g03296 672 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 64 309 IPR003439 GO:0005524
Vimu11g03296 672 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 64 299 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03296 Vimu-Chr11 53271227 53274333 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03296 82 244 Calmodulin-binding Proteins AT2G36910 33.918 1.49e-10 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03296 K05681 - gmx:100790102 1097.03