Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03295 ATGGAGGAAGAGAACGACATAACAGTGACATGGGAGGATTTGCAGGCTAGAGTTGCCGGTGGAAAGAATAGAAAATTAATACTGAATGGTCTAACTGGTTATGCACAACCAGGGAAGCTTTTGGCTATAATGGGTCCTTCTGGTTGTGGCAAATCAACACTTCTTGATGCTTTAGCAGGAAGATTGGGATCGAACATAAAGCAAACGGGGAAGATTCTAATCAATGGCCTGAAGCAAGAACTGGCCTACGGAACATCAGGGTATGTGACACAAGACGATGCGATGCTGTCATGTTTAACAGCTGGAGAAACATTGTACTACTCAGCTGAGCTCCAATTTCCAAACAGCATGTCTATAGCTGAGAAGAAGGAACGAGCAGATGCTACACTGAGAGAAATGGGTCTGCAAGATGCCATCAACACAAGGGTTGGAGGGTGGAGTGGTAAAGGTCTGAGTGGGGGACAGAAACGGAGACTCAGCATATGCATTGAGATTCTAACACATCCCAGACTCCTCTTCCTTGATGAACCAACCAGTGGCCTTGATAGTGCAGCTTCCTTTTATGTTATGACTGGAATTGCAAGTCTCATTCTAAAGGATGGAATTCAAAGGACTATTGTGGCTTCCATTCACCAGCCTAGCAGTCAGGTTTTCCAACTTTTTCATCATCTTTGTCTTCTCTCTTCAGGAGAGACCGTGTATTTTGGACCAGCATCTCATGCAAATCAGTTTTTCTCTTCCAATGGTTTTCCCTGCCCACCTCTCTACAATCCTTCAGATCATTACCTAAGGATCATAAACAAAGATTTCAATCAGGATGCCGACGAAGGAATTACCACTGAAGAAGCAACTAATATCCTTGTCAGTTCTTATAAATCGTCTGAATATAGTAATGACGTTCAGAATGAAATAGCAAAAATAAGTGTAAACGATTCTGGTGCAGTTGGAAGGAAGAAGATTCACGCTGCATTCCTTACTCAGTGTCTGGTTCTTCTGAAAAGATCTTCGAAGCAAATCTATCGTGATATAAGCAATTACTGGTTACGTCTAACTGTCTTTATAGCAGTATCTGTAAGCTTGGGCTCTATTTTCTATCACGTTGGTGGAAGTATGAGATCAATTCAGGAAAGAGGATCACTGCTTTGTTTTTTCGTTTCGGTTCTGTGTTTCATGACACTTGTCGGTGGATTCTCGCCGTTAATCGAGGAAATGAAGGTGTTAAAGAGAGAGAGATTGAATGGACATTATGGTATAACAGCTTTTCTGGTAGGAAGCACATTTTCTGCTGTTCCTTACACACTATTGATATCTATCATTCCGGGAGCTATCGTTAATTATCTTTCTGGACTGCACAAAGGATTAGAGAACTTTGTATACTTTTGTTCTGTCCTATTTGGTATTGTGATGTGGGTTGAGAGCCTGATGATGGTTGTTGGGAGCATTTTTCCAAATTTTGTTATGGGTGTGATCACTGCTGGTGGGGTTGAAGGACTGATGATTTTGACAAGTGGATTCTACAGGCTGCCTAATGATCTTCCGAAACCATTATGGAAATACCCTTTCTACCATGTTTCCTTCCTCAACTATGCTTTCCAAGGATTGTTAAAGAATGAATTTGAGGGATTAATGTTTGGTCCAGATGAGAATGGTGGCATAAGTCTTAGTGGTAGATATATTCTGTCAGAGACATGGCATGTGCAAATGGGTCATTCAAAGTGGGTTGATCTTTCTATCATGTTTGCTATGATTCTTCTCTATAGAGTTCTATTCTTGGTCATAACTAAATTCAAGGAGAAATTGAAACATGTTCATGTTGGCACTAATGCTCCTAAAGCAAAAGTTTTCTCCAGAACCAACATCACTGATCTTTAG 1872 0.4092 MEEENDITVTWEDLQARVAGGKNRKLILNGLTGYAQPGKLLAIMGPSGCGKSTLLDALAGRLGSNIKQTGKILINGLKQELAYGTSGYVTQDDAMLSCLTAGETLYYSAELQFPNSMSIAEKKERADATLREMGLQDAINTRVGGWSGKGLSGGQKRRLSICIEILTHPRLLFLDEPTSGLDSAASFYVMTGIASLILKDGIQRTIVASIHQPSSQVFQLFHHLCLLSSGETVYFGPASHANQFFSSNGFPCPPLYNPSDHYLRIINKDFNQDADEGITTEEATNILVSSYKSSEYSNDVQNEIAKISVNDSGAVGRKKIHAAFLTQCLVLLKRSSKQIYRDISNYWLRLTVFIAVSVSLGSIFYHVGGSMRSIQERGSLLCFFVSVLCFMTLVGGFSPLIEEMKVLKRERLNGHYGITAFLVGSTFSAVPYTLLISIIPGAIVNYLSGLHKGLENFVYFCSVLFGIVMWVESLMMVVGSIFPNFVMGVITAGGVEGLMILTSGFYRLPNDLPKPLWKYPFYHVSFLNYAFQGLLKNEFEGLMFGPDENGGISLSGRYILSETWHVQMGHSKWVDLSIMFAMILLYRVLFLVITKFKEKLKHVHVGTNAPKAKVFSRTNITDL 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03295 623 ProSitePatterns ABC transporters family signature. 151 165 IPR017871 GO:0005524|GO:0016887
Vimu11g03295 623 SMART AAA_5 37 226 IPR003593 GO:0016887
Vimu11g03295 623 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 4 605 - -
Vimu11g03295 623 FunFam ABC transporter G family member 11 7 290 - -
Vimu11g03295 623 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 10 245 IPR027417 -
Vimu11g03295 623 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 9 254 IPR003439 GO:0005524
Vimu11g03295 623 Pfam ABC transporter 29 179 IPR003439 GO:0005524
Vimu11g03295 623 Gene3D - 1 248 IPR027417 -
Vimu11g03295 623 Pfam ABC-2 type transporter 211 310 IPR043926 GO:0140359
Vimu11g03295 623 Pfam ABC-2 type transporter 326 539 IPR013525 GO:0016020|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03295 Vimu-Chr11 53259811 53262665 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03295 27 240 Calmodulin-binding Proteins AT2G36910 26.244 9.92e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03295 K05681 - gmx:100820615 975.696