Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03293 GATATGGATAGTTCAGAAGCAGTTTTGGAGCAAAGTGTGATGAACATTGAAGGCAGCAGAGTGGAAATGGAAGGTATCTGCTTGACATGGAAGGATGTATGGATCACTGCTTCTAACAGAAATAATGGAAGCATATCAATTCTTGAGGGTCTCGCTGGTTATGCTAAACCAGGGCAACTTTTAGCAATTATGGGTCCTTCTGGCTGTGGCAAATCTACACTACTTGATACTTTAGCAGGTAGATTAAGTTCAAAGATGAGGCAAAGTGGGGAGATTCTGATCAATGGTCACAAACAAAGATTGGCTTACGGAACCTCAGCATATGTGACACAAGATGATACCTTAATGACAACCTTAACGGTTGGAGAAGCTGTGCAGTATTCAGCTCAACTGCAGTTACCTGACACCATGTCAAAACAAGAGAAGAAAGAGAGAGCAGATTTTACAATCAGAGAAATGGGTCTTCAAGATGCCATTAACACAAGAATTGGAGGATGGGGTGTTAAAGGGATTAGTGGTGGTCAGAAAAGGAGAGTTAGCATCTGCATTGAGATTCTTACACGACCTAAACTTCTCTTTCTTGATGAACCAACAAGTGGACTTGACAGTGCAGCTTCTTACTATGTCATGAAAAGAATCGCTTCCCTTGCTCAAAATTATCACACTAAGAGGACTGTTATAGCATCAATCCATCAACCTAGTACTGAAGTTTTTCAACTCTTCAATAACCTTTGTCTTTTGTCTTCTGGGAAAACAGTTTACTTTGGACCTGCTTCTGCAGCAACTGAGTTTTTGGCTTCATATGGCTATCCTTGTCCCACTCTCATGAATCCGTCTGATCATTTACTGAAGACTATAAACAAGGATTTCGATCAGGACATTGAGGTGGGTTTAGCAGGAACTACAAACTTGCCCACCGAACAAGTAATTCACATCCTTGTCAACTCATACAAATGCTCTGAGAGGAATCAAGAACTTCACAGTGAAGTAGCTTTACTATCTGAGAAGGTAACCCTCAATGCTTCTTCTTCTCTAACATTGATGAATGCTCACATTGCAAATAGTTATAACATTAACTTTAACTTGTTTCAGCAGAAAAGTTCATTGGATGTGAAGAGATCACATGCTGGCTTCCTTAATCAGTGCTTTGCTCTTACCAAAAGATCGTTCGTCAACATGTTTCGTGATCTCGGCTATTATTGGTTGCGCCTTGTCATATATATTGCATTGGGTATAAGTTTAGCCACTGTTTTCCATAATTTGGGCACAAGTTATGACTCCATTAAGGATCGAGGTTCTCTTGTTGCTTTCATAGTTGGATTCCTCACTTTCATGACTATTGGTGGATTCCCTTCCTTTGTGGAAGTCATGAAGGTATTTCAACGAGAAAGAGAAAACGGGCATTATGGTGTCACTGCATTTGTGATTGCAAACACCTTATCATCTATCCCATTCTTAGTATTGGTTGCACTAATTCCTGGTGTTATAGCTTACTACCTTCCTGGTCTTCAGAATGGATTCGAACATTTCGTGTATTTCATTTGTGTTTTATTTTCTAGTTTGATGTTAGTGGAGAGTCTTATGATGATAGTTGCGAGCATTGTTCCCAACTATCTGATGGGAATCATAACTGGTGCTGGAATTCAAGGAATCATGCTTTTACTAAGTGGCTTCTTCAAGTTGCCAAACGATATTCCCAAGCCAGTTTGGAAATACCCTTTACACTACGTTGCTTTTCATACCTTTGCCAACCAAGGAATGTTCAAGAACGAGTATGAAGGACTAAGATTTGAAGCGGAAAATGATGGAGGAAGCTCACACAGGTACATCACTGGTGAAGAGGTTTTGAGAAATGTGTGGCAAGTTGACATGAGGTACTCAAAGTGGGTTAATCTTGCAATCTTGCTGGGGATGATTGTTCTGTATCGAGTATTATTTTTGGTTATTATCAAGATTGAAGAGAAGATGAAGACCGTTGTTGCCCCACTATCTTCCAAGAGATCAACACAAATCATGGAAAACCCCAACGCCACTCCTTCGCATTCACAAAATACTTAG 2058 0.4004 DMDSSEAVLEQSVMNIEGSRVEMEGICLTWKDVWITASNRNNGSISILEGLAGYAKPGQLLAIMGPSGCGKSTLLDTLAGRLSSKMRQSGEILINGHKQRLAYGTSAYVTQDDTLMTTLTVGEAVQYSAQLQLPDTMSKQEKKERADFTIREMGLQDAINTRIGGWGVKGISGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYYVMKRIASLAQNYHTKRTVIASIHQPSTEVFQLFNNLCLLSSGKTVYFGPASAATEFLASYGYPCPTLMNPSDHLLKTINKDFDQDIEVGLAGTTNLPTEQVIHILVNSYKCSERNQELHSEVALLSEKVTLNASSSLTLMNAHIANSYNINFNLFQQKSSLDVKRSHAGFLNQCFALTKRSFVNMFRDLGYYWLRLVIYIALGISLATVFHNLGTSYDSIKDRGSLVAFIVGFLTFMTIGGFPSFVEVMKVFQRERENGHYGVTAFVIANTLSSIPFLVLVALIPGVIAYYLPGLQNGFEHFVYFICVLFSSLMLVESLMMIVASIVPNYLMGIITGAGIQGIMLLLSGFFKLPNDIPKPVWKYPLHYVAFHTFANQGMFKNEYEGLRFEAENDGGSSHRYITGEEVLRNVWQVDMRYSKWVNLAILLGMIVLYRVLFLVIIKIEEKMKTVVAPLSSKRSTQIMENPNATPSHSQNT 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03293 685 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 19 666 - -
Vimu11g03293 685 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 28 270 IPR027417 -
Vimu11g03293 685 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 28 274 IPR003439 GO:0005524
Vimu11g03293 685 FunFam ABC transporter G family member 11 26 316 - -
Vimu11g03293 685 SMART AAA_5 57 246 IPR003593 GO:0016887
Vimu11g03293 685 Pfam ABC-2 type transporter 381 592 IPR013525 GO:0016020|GO:0140359
Vimu11g03293 685 ProSitePatterns ABC transporters family signature. 171 185 IPR017871 GO:0005524|GO:0016887
Vimu11g03293 685 Pfam ABC transporter 54 199 IPR003439 GO:0005524
Vimu11g03293 685 Gene3D - 28 282 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03293 Vimu-Chr11 53239471 53242958 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03293 45 235 Calmodulin-binding Proteins AT2G36910 29.949 1.80e-11 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03293 K05681 - gmx:100794527 1048.11