Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03282 ATGGCCGGCGAACTCGCCGGAGACCACACGCCAGAGCTCCTCTGTCTGGTCCACGACATCGCCGGAATGTGCGTCGGCTCCTCCTCCGCTGCACCCATTGCCACCGACGCCATGTTCCGCAAGGACTGTACCGATCTAGTTCGCCGGATCTCCCTTCTCACCCACTTGTTCGAGGAGATTAGAGAACTCAACAGCAACAATGTTGTCGCTTCCGCTTCCTCGTCTTCTTCCTCCTCTTCCGCCGCATCTTGGTCCTCTGATCTTGTCTTCGCTCTTCAGTCTGCAAGAAGTTTGCTTTCCGTCGCCAGAAACTTCCGTTCCAATTGCTCCTCTGTGAGTTTCTTGATCTATTTCAACGCTAACGCGTTGGGGATTTCGAAACTTAAGCTCCGACTTCGTATTCTTCGGACTTGTTATGTTCTTTGTGTTATTTACAAAGAGGATCGGTTTTGTCGAAGAGACCATTCTCCCACAGCTTGGGGAATCAAGGATGGAGCTGCAAAGACCATTGTCTTCCAATTTCAGTGTGTGACGTGGAAATTGGAGAAACTATTGAGTGATTTGCCGTATGACAATTTGGACATCTCAGAGGAAGTCAAAGAACAGGTGGATTTGGTAAGAACGCAATTGAAACGAGCCTCAGAAAAATATGGGTTTATGATTTCAAAGATGCCATCTCATGAATTATCCAAGCCGCTGACTGAAGAAATTAGTCAGGTTCTTTCCAAATCCGTGGGTGGATTATACAAACAACATAGCTGTCCTGAAAATTTATCAGAACTAGACAGCATTTCTAAAAGCAATGGAGAGAATAATTGCAGCACAAATCGACTTGGATCTCTCTTGGAAAGAGCAAGGAGCATCCCTGCATCTTCTGAAGTTCTCTTTTTGAATGAATCTGATCCTGAAAGTCAAGAAGTTTCTGAGACAAAAAGTATACCTGAGGTTAAAAGGCCTGAAGCAATTGTGATTCCTGAAGATTTTCTTTGTCCTATTTCCTTGGAAATAATGAGGGATCCTGTCATTGTGGCGACGGGTCAGACGTATGAGAGATCTTACATACAGAGATGGATAGATTGTGGAAATACAACGTGTCCGAAAACTCAGCAGAAGCTCCAACATTTGACACTCACACCAAATTATGTTTTAAGGAGCCTTATTTCTCAGTGGTGTATAGAGCACAACATCGAGCAGCCAACAGGACTAACTAATGGGAAAATAAAGAAGAGTGACGGGTCATTCAGAGACGTTACGGGTGACATAGCAGCAATTGAAGCTCTGGTGCGGAAGCTCTCCAGCCGGTCTGTTGAGGAGCGTAGATCAGCTGTTACTGAAATTCGATCGCTATCCAAACGAAGTACTGACAATAGGATACTAATTGCTGAAGCTGGAGCCATTCCAGTTCTAGTCAACCTTCTAACATCAGAAGATGTATTGACGCAAGACAATGCTGTTACTTCAATTTTAAACCTTTCCATTTATGAAAATAACAAAGGACTTATAATGCTTGCTGGTGCCATTCCATCCATTGTCCAAGTCCTCCGTGCTGGAACCATGGAAGCAAGAGAAAATGCAGCAGCAACCCTCTTCAGCTTGTCACTTGCAGATGAGAACAAAATTATAATTGGCGCGTCAGGAGCCATACCCGCTTTGGTAGAATTGCTCCAAAACGGGAGTCCTAGAGGAAAGAAGGATGCTGCAACAGCATTATTCAATTTATGCATTTATCAAGGGAACAAGGGCAGGGCCATTAGGGCAGGGATCATCACAGCATTGTTGAAAATGCTTACAGATTCAAGCAAATCAATGGTTGACGAAGCCCTAACAATAATGTCAGTTCTTGCCAGTCACCAAGAGGCAAAAATTGCTATAGTAAAAGCCAGCACTATACCAGTTTTGATAGATCTTTTGAGGACCGGATTGCCTCGCAATAAAGAGAATGCAGCTGCTATTCTTCTCGCCTTGTGCAAGAGGGATGCCGACAATCTTGCTTGTATAAGTAGACTTGGTGCCGTCATACCTCTCTCTGAACTCGCTCGAACTGGTACAGAGAGGGCCAAACGGAAGGCTACTTCATTACTGGAGCATCTTCGTAAGTTGCAGCAACTTTAA 2112 0.4465 MAGELAGDHTPELLCLVHDIAGMCVGSSSAAPIATDAMFRKDCTDLVRRISLLTHLFEEIRELNSNNVVASASSSSSSSSAASWSSDLVFALQSARSLLSVARNFRSNCSSVSFLIYFNANALGISKLKLRLRILRTCYVLCVIYKEDRFCRRDHSPTAWGIKDGAAKTIVFQFQCVTWKLEKLLSDLPYDNLDISEEVKEQVDLVRTQLKRASEKYGFMISKMPSHELSKPLTEEISQVLSKSVGGLYKQHSCPENLSELDSISKSNGENNCSTNRLGSLLERARSIPASSEVLFLNESDPESQEVSETKSIPEVKRPEAIVIPEDFLCPISLEIMRDPVIVATGQTYERSYIQRWIDCGNTTCPKTQQKLQHLTLTPNYVLRSLISQWCIEHNIEQPTGLTNGKIKKSDGSFRDVTGDIAAIEALVRKLSSRSVEERRSAVTEIRSLSKRSTDNRILIAEAGAIPVLVNLLTSEDVLTQDNAVTSILNLSIYENNKGLIMLAGAIPSIVQVLRAGTMEARENAAATLFSLSLADENKIIIGASGAIPALVELLQNGSPRGKKDAATALFNLCIYQGNKGRAIRAGIITALLKMLTDSSKSMVDEALTIMSVLASHQEAKIAIVKASTIPVLIDLLRTGLPRNKENAAAILLALCKRDADNLACISRLGAVIPLSELARTGTERAKRKATSLLEHLRKLQQL 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03282 703 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 464 506 IPR000225 GO:0005515
Vimu11g03282 703 FunFam RING-type E3 ubiquitin transferase 603 702 - -
Vimu11g03282 703 SUPERFAMILY RING/U-box 323 398 - -
Vimu11g03282 703 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 322 397 IPR013083 -
Vimu11g03282 703 Pfam U-box domain 324 395 IPR003613 GO:0004842|GO:0016567
Vimu11g03282 703 ProSiteProfiles U-box domain profile. 323 397 IPR003613 GO:0004842|GO:0016567
Vimu11g03282 703 PANTHER U BOX DOMAIN-CONTAINING 38 699 - -
Vimu11g03282 703 FunFam RING-type E3 ubiquitin transferase 323 398 - -
Vimu11g03282 703 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 422 464 IPR000225 GO:0005515
Vimu11g03282 703 Pfam Armadillo/beta-catenin-like repeat 536 574 IPR000225 GO:0005515
Vimu11g03282 703 Pfam Armadillo/beta-catenin-like repeat 454 492 IPR000225 GO:0005515
Vimu11g03282 703 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 505 547 IPR000225 GO:0005515
Vimu11g03282 703 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 546 588 IPR000225 GO:0005515
Vimu11g03282 703 FunFam RING-type E3 ubiquitin transferase 402 602 - -
Vimu11g03282 703 Coils Coil 196 216 - -
Vimu11g03282 703 Gene3D - 604 702 IPR011989 -
Vimu11g03282 703 Coils Coil 683 703 - -
Vimu11g03282 703 SMART arm_5 494 534 IPR000225 GO:0005515
Vimu11g03282 703 SMART arm_5 617 657 IPR000225 GO:0005515
Vimu11g03282 703 SMART arm_5 535 575 IPR000225 GO:0005515
Vimu11g03282 703 SMART arm_5 453 493 IPR000225 GO:0005515
Vimu11g03282 703 SMART arm_5 576 616 IPR000225 GO:0005515
Vimu11g03282 703 CDD RING-Ubox_PUB 325 377 IPR045210 -
Vimu11g03282 703 SMART Ubox_2 327 390 IPR003613 GO:0004842|GO:0016567
Vimu11g03282 703 SUPERFAMILY ARM repeat 423 697 IPR016024 -
Vimu11g03282 703 Gene3D - 499 603 IPR011989 -
Vimu11g03282 703 Gene3D - 404 498 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03282 Vimu-Chr11 53021711 53024612 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03282 13 702 U-box Gene Family AT1G23030 57.081 0.0 714
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03282 - - gmx:100815448 1059.67