Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03269 ATGGCAGAACTGATAGAAAGAATTGTAGAAAGGTCTTGTCCATTCATGGCTTCAAGATCATATGCTAATCTGTTAGACTTGGCTAATGGGGACTTGCTTGATATTCCTCACACTCCAAGAGCTCTTCCAAGGGTTATGACCGTTCCTGGAATTATTTCTGATCTGGATGGTTATGGTTGTAATGATGGTGATTCAGATGTTAGCTCCTCTGGGTGTAGGGAGCGGAAAATCATTGTGGCAAACATGTTGCCATTGCAGGCTAAAAGAGATATAGAAACTGCTAAATGGTTCTTCAGTTGGGATGAGGATTCAATTTTATTACAATTAAAAGATGGGTTTTCTTCTGATACTGAAGTAATATACGTGGGTTCTCTCAAGGTCGAAATAGATCTCTGTGAGCAGGATGCAGTTGCTCAGAGATTGCTGGATGAATTTAATTGTGTACCTACTTTCCTTCCTCATGATCTCCAGAAGAAGTTCTACCTTGGCTTCTGTAAGCAGCAACTTTGGCCTCTCTTTCATTATATGTTACCCATATGCCCAGATCATGGTGATCGCTTTGACAGAATACTTTGGCAGGCCTATGTTTCTGCAAACAAAATATTTGCAGACAAGGTCATGGAAGTAATTAATCCCGATGATGATTTTGTTTGGGTTCATGACTATCACTTAATGGTTTTGCCGACTTTCTTGAGGAAGCGATATAATCGGGTTAAGCTTGGATTCTTTCTGCATAGTCCTTTTCCTTCTTCTGAAATATACCGAACTTTACCAGTACGGGATGAAATTTTGAGGGGATTGTTGAACTCTGATTTAATTGGCTTTCATACATTTGATTATGCTCGCCACTTTCTTTCTTGCTGCAGTAGAATGCTAGGTCTGGACTATGAATCTAAGCGAGGACATATAGGGCTTGATTACTTTGGCCGCACTATTTTTATTAAAATTTTGCCTGTAGGTATTCACATGGGTAGACTTGAATCTGTATTAAATCTTTCTTCTACATCTGCTAAACTGAAAGAGGTTCAGGAAGAGTTTAAGGGTAAGAAAGTAATTCTTGGTGTTGATGACATGGATATATTTAAGGGCATTAGTCTGAAACTTCTAGCCGTTGAACATCTGCTGCAGCAGAATTCAGATTTGCAGGGCAAAGTTGTCCTAGTTCAAATTGTAAATCCTGCAAGGGGCTTAGGGAAGGATGTTCAAGAAGCAAAGAATGAAACATATTTAATTGCCAGGAGGATCAATGATACATATAGCAAAAATAATTATCAGCCAGTCATTCTCATTGACCGACCTGTTCCTCGCTTTGAGAAGAGTGCGTATTATGCTGTAGCAGAATGTTGCATAGTCAATGCTGTAAGGGATGGCATGAACTTAGTTCCATACAAATATATAGTCTGTAGACAGGGAACTGCACGACTGGATGAATCTTTGGGTAGAAAAAATGATTCTCCTCGGACAAGCATGCTTGTTGTGTCTGAGTTCATTGGTTGTTCACCTTCTCTTAGCGGAGCAATAAGGGTCAATCCCTGGGACATAGATGCCGTGGCGGATGCTATGTATGCTGCCCTTACTATGAATGATTCAGAGAAGCAGTTGCGCCATGAGAAGCACTATAGGTATGTCAGTTCTCATGATGTGGCATATTGGGCACATAGCTTTATGCAGGATCTGGAGAGAGCCTGCAAAGATCATTACACCAAAAGATGCTGGGGATTTGGTTTGGGCTTGGGGTTCAGAGTTGTTTCTCTCTCTCATGGTTTTAGGAAGTTGACGATTGACCATGTTGTTTCAGCATACAAGAGAACCAATAGAAGGGCCATCTTTCTTGATTATGATGGTACTGTTGTATCACAATCTTCCATAAGTAAAGTCCCCAGCCCTGAAGTCCTCTCCGTCTTAAATGCTCTCTGTAATGATCCCAAGAATATCGTGTTCATTGTTAGTGGGAGGGGAAGGGATTCACTGAGTGACTGGTTTACTTCATGCCAAATGCTGGGACTTGCAGCAGAACATGGGTACTTTTTACGGTATGTCATTTTAATGTTTGGAAGATTGGGCAACTTTATATCTCGCTATCTGCCACCCTGTACTTTCCCTCAAAAAAGCTTAAAGTGTATTTCCCGCTTCTTTTTATGGTTGCAGGTGGAACAAAGATTCGGAATGGGAATCAAGTCACTTGTCTGCAGACATGGATTGGAAGAAGATAGTGGAACCTATCATGCAGTTATATACAGAAGCAACTGA 2250 0.408 MAELIERIVERSCPFMASRSYANLLDLANGDLLDIPHTPRALPRVMTVPGIISDLDGYGCNDGDSDVSSSGCRERKIIVANMLPLQAKRDIETAKWFFSWDEDSILLQLKDGFSSDTEVIYVGSLKVEIDLCEQDAVAQRLLDEFNCVPTFLPHDLQKKFYLGFCKQQLWPLFHYMLPICPDHGDRFDRILWQAYVSANKIFADKVMEVINPDDDFVWVHDYHLMVLPTFLRKRYNRVKLGFFLHSPFPSSEIYRTLPVRDEILRGLLNSDLIGFHTFDYARHFLSCCSRMLGLDYESKRGHIGLDYFGRTIFIKILPVGIHMGRLESVLNLSSTSAKLKEVQEEFKGKKVILGVDDMDIFKGISLKLLAVEHLLQQNSDLQGKVVLVQIVNPARGLGKDVQEAKNETYLIARRINDTYSKNNYQPVILIDRPVPRFEKSAYYAVAECCIVNAVRDGMNLVPYKYIVCRQGTARLDESLGRKNDSPRTSMLVVSEFIGCSPSLSGAIRVNPWDIDAVADAMYAALTMNDSEKQLRHEKHYRYVSSHDVAYWAHSFMQDLERACKDHYTKRCWGFGLGLGFRVVSLSHGFRKLTIDHVVSAYKRTNRRAIFLDYDGTVVSQSSISKVPSPEVLSVLNALCNDPKNIVFIVSGRGRDSLSDWFTSCQMLGLAAEHGYFLRYVILMFGRLGNFISRYLPPCTFPQKSLKCISRFFLWLQVEQRFGMGIKSLVCRHGLEEDSGTYHAVIYRSN 749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03269 749 Gene3D Glycogen Phosphorylase B; 69 327 - -
Vimu11g03269 749 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 43 678 IPR001830 GO:0003824|GO:0005992
Vimu11g03269 749 Gene3D - 606 682 IPR023214 -
Vimu11g03269 749 Pfam Glycosyltransferase family 20 75 560 IPR001830 GO:0003824|GO:0005992
Vimu11g03269 749 CDD GT20_TPS 75 560 IPR001830 GO:0003824|GO:0005992
Vimu11g03269 749 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 75 564 - -
Vimu11g03269 749 FunFam Alpha,alpha-trehalose-phosphate synthase 329 544 - -
Vimu11g03269 749 Pfam Trehalose-phosphatase 610 678 IPR003337 GO:0003824|GO:0005992
Vimu11g03269 749 SUPERFAMILY HAD-like 607 679 IPR036412 -
Vimu11g03269 749 Gene3D Glycogen Phosphorylase B; 328 544 - -
Vimu11g03269 749 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 68 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03269 Vimu-Chr11 52820704 52822953 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03269 16 679 Trehalose Biosynthesis Gene Families AT1G60140 74.548 0.0 1074
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03269 K16055 - gmx:100775779 1287.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g03269 11 52820704 52822953 Vimu10g01201 10 11881346 11888858 ECH
Vimu11g03269 11 52820704 52822953 Vimu11g03269 11 52820704 52822953 ECH
Vimu7g03737 7 32756089 32759259 Vimu11g03269 11 52820704 52822953 PCT