Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03252 ATGGCTTCCCCACTCAGAATTTCAAGGCTCATCTCTCGCTCCTTTTCTTCTACTTCCTTCTTTTCACGAGGTGGGAATAGTTACCTTGGCTCAAGACTCTCTAAATACAGCACTGCTGCTGCCATTGAAGAACCCATTAAACCATCAGTGCAAGTGGAATATACCCAACTCTTAATTGATGGAAAATTCGTAGATGCTGCTTCTGGTAAAACTTTTCCAACTTTAGATCCAAGAACGGGGGAAGTGATTGCTCATGTTGCTGAGGGTCACTCTGAAGATGTTGATCGAGCTGTTGCAGCTGCACGCAAGGCATTTGATCATGGTCCATGGCCTAGGATGACAGCTTATGAAAGGCAAAGGATCTTGTTACGTGCCGCTGATCTGATTGAGAAGCATAATGATGAGATTGCAGCACTTGAGACTTGGGATAATGGAAAGCCTTTTGAACAGTCTGCTAAGATTGAGATTCCAATGCTTGTTCGTCTGTTTCGATACTATGCTGGTTGGGCAGATAAGATTCATGGTCTGACAGTTCCAGCTGATGGACCTTATCATGTGCAAACTTTGCACGAACCCATTGGTGTTGCGGGTCAGATCATTCCTTGGAACTTCCCTCTTCTCATGTTTGCCTGGAAGGTTGGACCAGCATTGGCCTGTGGCAACACCATTGTTCTCAAAACAGCTGAGCAGACACCATTATCTGCTTTATATGTAGCAAAACTATTTCTTGAGGCTGGACTTCCTACTGGTGTTTTAAATGTGATATCGGGATTTGGCCCCACTGCTGGTGCTGCTCTTGCAAGTCACATGGAGGTTGATAAGCTTGCTTTTACTGGTTCCACTGATACTGGGAAAGTTGTCCTTGAATTGGCGGCTAAAAGCAATCTTAAGCCTGTAACTTTGGAGCTTGGTGGGAAATCCCCGTTTATTGTGTGTGAAGACGCTGATGTAGATCAGGCTGTTGAGCTAGCACACTTTGCTTTATTCTTTAATCAGGGACAATGTTGCTGTGCGGGGTCACGAACATATGTACACGAAAGAGTGTACGATGAGTTTGTTGAGAAAGCGAAGGCTCGTGCTTTGAAACGAGTTGTTGGTGATCCATTCAAGGGGGGTATAGAGCAGGGTCCTCAGATTGATTCAGATCAATTTGAGAAAATCCTGAGGTATATCAGATATGGTGTTGAAAGTGGGGCTACCCTTGAAACCGGAGGAGACAGACTTGGCAACAAGGGCTACTATATTCAACCAACTGTCTTCTCAAATGTTAAGGATGACATGAAGATTGCAAAGGATGAAATCTTTGGTCCAGTCCAATCCATATTAAAATTCAAGGACCTTGGTGAGGTAGTTCAAAGAGCAAATAATACACGTTATGGGCTTGCAGCAGGAGTGTTCACAAAGAACATAGACACTGCCAACATTTTGACTCGGGCACTGAGAGTAGGAACAGTTTGGGTAAATTGCTTTGACACATTCGATGCTGCAATCCCCTTTGGGGGTTACAAGATGAGTGGTCAGGGCAGAGAAAAAGGAGAGTATAGTCTCAAGAACTACTTGCAAGTGAAGGCTGTTGTTCATCCCTTGAAAAACCCAGCCTGGCTTTGA 1608 0.4447 MASPLRISRLISRSFSSTSFFSRGGNSYLGSRLSKYSTAAAIEEPIKPSVQVEYTQLLIDGKFVDAASGKTFPTLDPRTGEVIAHVAEGHSEDVDRAVAAARKAFDHGPWPRMTAYERQRILLRAADLIEKHNDEIAALETWDNGKPFEQSAKIEIPMLVRLFRYYAGWADKIHGLTVPADGPYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPALACGNTIVLKTAEQTPLSALYVAKLFLEAGLPTGVLNVISGFGPTAGAALASHMEVDKLAFTGSTDTGKVVLELAAKSNLKPVTLELGGKSPFIVCEDADVDQAVELAHFALFFNQGQCCCAGSRTYVHERVYDEFVEKAKARALKRVVGDPFKGGIEQGPQIDSDQFEKILRYIRYGVESGATLETGGDRLGNKGYYIQPTVFSNVKDDMKIAKDEIFGPVQSILKFKDLGEVVQRANNTRYGLAAGVFTKNIDTANILTRALRVGTVWVNCFDTFDAAIPFGGYKMSGQGREKGEYSLKNYLQVKAVVHPLKNPAWL 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03252 535 CDD ALDH_F2BC 52 526 - -
Vimu11g03252 535 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 301 308 IPR029510 GO:0016491
Vimu11g03252 535 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 329 340 IPR016160 GO:0016491
Vimu11g03252 535 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 39 525 - -
Vimu11g03252 535 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 59 523 IPR016162 GO:0016491
Vimu11g03252 535 FunFam Aldehyde dehydrogenase, putative 497 523 - -
Vimu11g03252 535 FunFam Mitochondrial aldehyde dehydrogenase 2 307 496 - -
Vimu11g03252 535 SUPERFAMILY ALDH-like 50 529 IPR016161 GO:0016491
Vimu11g03252 535 Pfam Aldehyde dehydrogenase family 63 525 IPR015590 GO:0016491
Vimu11g03252 535 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 305 494 IPR016163 GO:0016620
Vimu11g03252 535 FunFam ALD5p Mitochondrial aldehyde dehydrogenase 59 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03252 Vimu-Chr11 52583251 52586928 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03252 6 535 Aldehyde Dehydrogenase Gene Family AT3G48000 78.277 0.0 887
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03252 K00128 - gmx:100777399 986.867
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g03252 11 52583251 52586928 Vimu11g03252 11 52583251 52586928 ECH
Vimu7g03728 7 32578951 32582980 Vimu11g03252 11 52583251 52586928 PCT