Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03250 ATGAAATTTCAAGTGTTGCTTCTCCTGCTTTCCATCACCCTTTGTCTTGGATCTTCTCAAACTTCTGTTTATGATTGTGTACTTGATATTCAATCTTCTTCAGCCTTGGTTAGTTCGAACTGTGAATTGTACAATTGTGGGGGGTTTATCAATGGCTTTTGTGGACCATATTTTGGTGATTACCTTCATGCCTTGGGGGTGAGGGCAAACCAAACTGGAAATATATTCTTGAATCCCTCAGAGCAAAAAAACTGTATGGCATCAATGGAAGCTTTTGACAAAAAATTTACTTGTTCTGGAATGGAGAAGCTAACAAGTGGAACTGGTGGTTGCTCTGATTACACCATCACAGATGTTGTTAATCAGCTTGGGGACAGCCTTAGGAGATTGGAGGAAGAATGCATGCCTTTGAGCACATATGGTAGGCCAAATGAAACTTGTACTAAATGTTTGAAAGCATGGGAGGATATCAGTGCAAAACCAGACACTACAAGAGGATCAGAGCTAGCAAATATCAGTTCTTATCTTTGTAGGTTTGCTGTGCTTGTCTCACTAACAAGCACAGGAATTTATGATAAGGAATCAATTCTAGAAGTTTATAAATGCCTTGGGGAACATGCCCTTTCTGGAGGATTAGCTTCAGCTAATGAAGAAGTCAAGGCTAGGGGCAATACTAATATCAACACAGGTACATGTATATATATGTTCAGGTTGCTACCGGATATGATTCATGATGATTTTGTCAAACAATACGTGACTATTTTGTTGAAAAATATAATGGCAACAGGTCTCTGGATTGCCTTTGGCATAATAGGAGTTACAGTATTGGTGTTTCTTGTCGCTCTAGCATTATTTGTCACAAGAATGAGAAGTGTTCCATCAGTACAACATGAGTCTGATTCACCTTCACTGAAGATAACTTTGAAGGATGTTTATGTAGCAACAGACAATCTCAGTGCTTCAAATTTCATAGGCCAAGGCATAGCCGGAAAAGTGTACAAAGGTGTACTCTCCAACAATCAATCTGTTGCAGTGAAGCATATCACCAATGAATGTTACATGGAGACATTTGTCAGAGAAGTGAGAAGCCTTTCTCATGTTAGACATCACAACTTAGTAGCTTTGCTGGGATACTGTGAAAGTGAAGCTGAATGTTTTCTAGTGTATGAGTTATGCCACAATGGAAACCTCTCAGAATGGCTATTCGGCAATGGTAAAGTTCTTTCATGGATTCAAAGACTAGAAATTGCCATTGATAGTGCAAGAGGCCTTGAGTTTCTCCACACCTACCCAAATGGCTGCATCGTTCACCGTGATATAAAGCCATCAAACATTCTCATTGATGCTAACTTCCAAGCAAAGCTTTCAGACTTTGGGTTGTCCAGGGTTATGGACTTGGGTCAATCCTATGTGAGCTCAGAAGTAAGAGGAACATTTGGTTATATTGATCCTGAATATAGGGCAAATCACCATGTAAAAGCCTCAGGAGATGTCTACAGCTTTGGAATAATGTTGTTGCAACTTTTATCAGGACAAAGGATCCTCAACATTGATTTCGAGAGACCAATAGATGTTGTTAGAGGTGGTGATATTTCAGAATTTGCTGATCCTAAACTCGAAGGGAAGTACTCAGTTGAAGCATTTGACATCGTACTAAAACTAGCTTTGTCTTGCATAGGGCTCAAGCGCCAAAGGCCCTCTATAGGTCACGTGTTATATAGCTTACAAAAGACACTAGATATTTCTTTATAA 1752 0.395 MKFQVLLLLLSITLCLGSSQTSVYDCVLDIQSSSALVSSNCELYNCGGFINGFCGPYFGDYLHALGVRANQTGNIFLNPSEQKNCMASMEAFDKKFTCSGMEKLTSGTGGCSDYTITDVVNQLGDSLRRLEEECMPLSTYGRPNETCTKCLKAWEDISAKPDTTRGSELANISSYLCRFAVLVSLTSTGIYDKESILEVYKCLGEHALSGGLASANEEVKARGNTNINTGTCIYMFRLLPDMIHDDFVKQYVTILLKNIMATGLWIAFGIIGVTVLVFLVALALFVTRMRSVPSVQHESDSPSLKITLKDVYVATDNLSASNFIGQGIAGKVYKGVLSNNQSVAVKHITNECYMETFVREVRSLSHVRHHNLVALLGYCESEAECFLVYELCHNGNLSEWLFGNGKVLSWIQRLEIAIDSARGLEFLHTYPNGCIVHRDIKPSNILIDANFQAKLSDFGLSRVMDLGQSYVSSEVRGTFGYIDPEYRANHHVKASGDVYSFGIMLLQLLSGQRILNIDFERPIDVVRGGDISEFADPKLEGKYSVEAFDIVLKLALSCIGLKRQRPSIGHVLYSLQKTLDISL 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03250 583 ProSiteProfiles Protein kinase domain profile. 318 579 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g03250 583 Pfam Protein kinase domain 322 516 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g03250 583 Pfam SPARK 25 159 IPR043891 -
Vimu11g03250 583 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 230 577 - -
Vimu11g03250 583 SUPERFAMILY Protein kinase-like (PK-like) 299 573 IPR011009 -
Vimu11g03250 583 Gene3D Transferase(Phosphotransferase) domain 1 392 582 - -
Vimu11g03250 583 ProSitePatterns Serine/Threonine protein kinases active-site signature. 435 447 IPR008271 GO:0004672|GO:0006468
Vimu11g03250 583 Gene3D Phosphorylase Kinase; domain 1 284 391 - -
Vimu11g03250 583 FunFam Serine/threonine kinase protein 284 391 - -
Vimu11g03250 583 FunFam probable receptor-like protein kinase At5g59700 392 583 - -
Vimu11g03250 583 SMART serkin_6 318 568 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03250 Vimu-Chr11 52505563 52508204 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03250 273 579 Receptor kinase-like Gene Family AT3G46330 38.629 5.63e-58 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_URK-2 Vimu11g03250 Pkinase 1e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03250 - - gmx:100790181 876.315