Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03231 ATGAATGATTCAAAAGGGGGAACTTCTAGGAATTCAAATTCAACAGGATCAAGCCCCCCGATCAACCCTGACGTTAATTCCGAAGCAAACTCAACGGTTTCTTCTCTCGCCCCCTCTTCCGGTGATAATTCAGAAAAATATGTTGCCTATACAGTAGCCGGACTTTTAGCTGTTGCCTTGGTTGCTATAGCTGTAGCTATTGCTTTCGCGTTTAAGAGGAAGAAATCAAGTGATGATTCTAACGGGGAAGGAGGCTTTGGATGTGTTTACAAAGGTTGCCTGCCAGATGGAAAAATAGTTGCAGTAAAGCAGCTTAGGGCTGGCAGTGGGCAGGGAGAAAGGGAATTCAAGGCTGAAGTGGATATCATTAGCCGAGTACATCATCGATATTTGGTGTCATTAGTTGGTTATTGCGTGTCTGAACAGCAAAGAATTCTTATCTATCAATATGTTCCTAATGGAACACTCCATCATCACTTGCATGGAAGTGGAATGCCAGTGTTGGATTGGGTCAAAAGGCTAAAGATTGCAATAGGCGCTGCTAAGGGCCTTGCATATCTTCACGAGGACTGTAAGTATATCTGCACTTATTTGCATTTTACAATTACTTACATATAG 618 0.4256 MNDSKGGTSRNSNSTGSSPPINPDVNSEANSTVSSLAPSSGDNSEKYVAYTVAGLLAVALVAIAVAIAFAFKRKKSSDDSNGEGGFGCVYKGCLPDGKIVAVKQLRAGSGQGEREFKAEVDIISRVHHRYLVSLVGYCVSEQQRILIYQYVPNGTLHHHLHGSGMPVLDWVKRLKIAIGAAKGLAYLHEDCKYICTYLHFTITYI 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03231 205 Pfam Protein tyrosine and serine/threonine kinase 82 189 IPR001245 GO:0004672|GO:0006468
Vimu11g03231 205 SUPERFAMILY Protein kinase-like (PK-like) 82 191 IPR011009 -
Vimu11g03231 205 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 76 192 IPR047117 -
Vimu11g03231 205 SMART tyrkin_6 75 205 IPR020635 GO:0004713|GO:0006468
Vimu11g03231 205 MobiDBLite consensus disorder prediction 1 43 - -
Vimu11g03231 205 Gene3D Transferase(Phosphotransferase) domain 1 67 203 - -
Vimu11g03231 205 ProSiteProfiles Protein kinase domain profile. 75 205 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03231 Vimu-Chr11 52186863 52188287 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03231 82 191 Trihelix Transcription Factor Family AT1G23540 80.000 1.51e-62 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Vimu11g03231 PK_Tyr_Ser-Thr 1.3e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03231 - - pvu:PHAVU_003G060600g 217.624