Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03230 AGCCAAAAGATAATTCACCGAGATATTAAGTCAGCAAACATACTCTTGGATGATGCTTTTGAGGCAAAGGTTGCAGACTTTGGACTTGCTAGGCTAGCTGATGCTGCCAATAGCCACGTATCAACTAGGGTTATGGGGACCTTTGGCGATTACAACTTCACTATTCATTGGTGTTACTCTAGAAATAAGGCTCGTCCACTTCTCCTTCGTGCAATGGAGACACGTAATTTTAGTGAATTAGTAGATCCAAGACTTGAAAAACACTTTGTGGAGAGTGAAATGTCCAGAATGGTTGAGGCAGCTGCAGCTTGTGTTCGCCACTCAGCTCCTAAACGGCCTCGTATGTTTCAGGTGGTAAGAGCCTTGGATACTGGAGACGAAAAATGTGATCTTTCTAATGGGGTGAAATATGGTCAGAGCACAGTTTATGATTCTGGCCAATATGATAAAGATATAATGGTATTCAGAAGAATGGCGAATGGCACCTTTTCTAATTCTGATTTTAATACGTATGATAGTGAATATAGTCTTTCAAAACAGACCTCGGGAGGATCCGAATATAGTCTTTCAAAACAGACCTCGGGAGGATCCGAACAAAACTTGATGGGGCTTAGTTCTAGTGGCGAGTCAGAATCTAGAGCTATCAACTGGAATACTAACAGTCCTAAATTAAAACGGTGA 681 0.4156 SQKIIHRDIKSANILLDDAFEAKVADFGLARLADAANSHVSTRVMGTFGDYNFTIHWCYSRNKARPLLLRAMETRNFSELVDPRLEKHFVESEMSRMVEAAAACVRHSAPKRPRMFQVVRALDTGDEKCDLSNGVKYGQSTVYDSGQYDKDIMVFRRMANGTFSNSDFNTYDSEYSLSKQTSGGSEYSLSKQTSGGSEQNLMGLSSSGESESRAINWNTNSPKLKR 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03230 226 ProSiteProfiles Protein kinase domain profile. 1 226 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g03230 226 SUPERFAMILY Protein kinase-like (PK-like) 1 120 IPR011009 -
Vimu11g03230 226 MobiDBLite consensus disorder prediction 182 226 - -
Vimu11g03230 226 Gene3D Transferase(Phosphotransferase) domain 1 53 134 - -
Vimu11g03230 226 Gene3D Transferase(Phosphotransferase) domain 1 1 52 - -
Vimu11g03230 226 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 63 176 IPR047117 -
Vimu11g03230 226 ProSitePatterns Serine/Threonine protein kinases active-site signature. 4 16 IPR008271 GO:0004672|GO:0006468
Vimu11g03230 226 Pfam Protein kinase domain 1 45 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03230 Vimu-Chr11 52168833 52171136 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03230 3 183 Trihelix Transcription Factor Family AT1G70460 52.315 2.08e-64 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Vimu11g03230 Pkinase 8e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03230 - - vun:114178585 325.479