Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03229 ATGGTCCATGTAAGGAAAACATATGCAAAGTTGCATTCTTTGGTGAAAATGGGTGGTCTGGGTGTAGTAGAGTGGCTTAGACCCCTTGTGGAGACCAATGTTTGGGATTATGTAGTTGTTTGGAAATATGGGGATGACCCAACTAGGTTTATTGAGTGGATTGGTTGCTGTTGTAGAGGGAGTTGCAGTGTGAAGATTGGTGTGGAATCCAAAGAGGAAAAGGGTGAAGAATGTCACTTAGCTCCCATTTGCAGGGATAATTATCTTCAGCATCATGATTCAATTGGAACCCAAGTTTTGATCCCTATTGTTGGTGGTCTTATTGAGCTCTTCACTGAGAAACTGATTCCAATGGATATGAATATCATAGAGTTCATAACAGCACATGGTTGTGTCTCTTTGAAGCAAGAGGCCATATCTGCACAGAGCTACACCAGTCTGAATATCATTGAACATCTGCCATTAAGGGAACAGTACTCACATTGGTGGCTACCACACATGTCAGCAACTTTAACTCCGAGTGTCCATCAGCCTGCAACAAAACAGTGCACCTCTCATCCTAGCATTGAAGGACCCCCAAGCGGTTCTAATCCTTCAACTGAAGAACCATCATTTGATTCAAAATTTGTTGGTTTGATTCCAGATGAATATCTTAAACAATCAACTAAAATGTCTCCCATCCCCAAAACTAAAATGCCCAAGTACAGTAAAACTTCAGGGAAGCAGCAGAGAGGTTTGAGTTCTCATTGCAGCGATGAGGAAGAAGATAAATCAAAACTGGTCATGGAGCCTCAGAAGGAAAGGTACCAAGCTAAAAATCTTGTCACTGAGAGAAATAGGAGGAACAAGATTAAAAAAGGGCTTTTTACTCTGCGATCTCTAGTCCCAAAGATAACCAAGATGGATAGAGCTGCAATTCTTGCAGATGCTGTTGACTATATAAAGGAATTACAAGCACAAGTGAAAGAACTCAAAGATGAAGCCACTGCTTTGGAAGTTCAGAACTGTGAGAATACACCAAAATCGAGGAAGACAGCTGACAAAGAAAAAGAACAAACCAGAAGTAACACTCTTAATCAAAGTTCTTCTGATTGCACTAAAAAGATGCAGATGGAAGTGGCTAGTGCCAATATGACGACATTTGATGATAAAGTCCTTAACATTCTGACGGTTAAGTCTCTCATAGTTCCCCTTCACAACTTCAGTTCATAG 1212 0.4076 MVHVRKTYAKLHSLVKMGGLGVVEWLRPLVETNVWDYVVVWKYGDDPTRFIEWIGCCCRGSCSVKIGVESKEEKGEECHLAPICRDNYLQHHDSIGTQVLIPIVGGLIELFTEKLIPMDMNIIEFITAHGCVSLKQEAISAQSYTSLNIIEHLPLREQYSHWWLPHMSATLTPSVHQPATKQCTSHPSIEGPPSGSNPSTEEPSFDSKFVGLIPDEYLKQSTKMSPIPKTKMPKYSKTSGKQQRGLSSHCSDEEEDKSKLVMEPQKERYQAKNLVTERNRRNKIKKGLFTLRSLVPKITKMDRAAILADAVDYIKELQAQVKELKDEATALEVQNCENTPKSRKTADKEKEQTRSNTLNQSSSDCTKKMQMEVASANMTTFDDKVLNILTVKSLIVPLHNFSS 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03229 403 SMART finulus 274 323 IPR011598 GO:0046983
Vimu11g03229 403 MobiDBLite consensus disorder prediction 221 260 - -
Vimu11g03229 403 MobiDBLite consensus disorder prediction 174 204 - -
Vimu11g03229 403 Pfam Helix-loop-helix DNA-binding domain 275 318 IPR011598 GO:0046983
Vimu11g03229 403 MobiDBLite consensus disorder prediction 174 205 - -
Vimu11g03229 403 Coils Coil 307 334 - -
Vimu11g03229 403 Gene3D - 258 335 IPR036638 GO:0046983
Vimu11g03229 403 MobiDBLite consensus disorder prediction 336 366 - -
Vimu11g03229 403 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 268 336 IPR036638 GO:0046983
Vimu11g03229 403 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 268 317 IPR011598 GO:0046983
Vimu11g03229 403 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 176 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03229 Vimu-Chr11 52165224 52167928 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03229 22 342 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G16910 28.288 1.06e-37 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vimu11g03229 HLH 7.5e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03229 - - gmx:100807261 552.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g03229 11 52165224 52167928 Vimu11g03229 11 52165224 52167928 ECH