Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03202 ATGCAGGTAAGCGTCCCATGCAGCAGTTTATCAACGGTGGTGACAGTCAGATGCGGCCACTGCACAAGCCTTCTCTCTGTTAATATGAACAAAACTTCCTTTGTCCCTTTCCACCTTCTTGCTTCTCTTTCTCATGTTGAGCCAAAGGAAGGTAGTTCAGAAGATGGTGCAGACAAGAGTTTGAAGAACTATAGTTCATACATAGTAACCTATTCTGATTGTGAGGAAGAGACCACACCTCAATCTTCCAGCGTTGTGAATAAACCCCCAGAGAAGAGACAGAGGACACCGTCTGCTTATAACATCTTCATCAAAGAAGAGATTAAAAGGCTAAAAGCTGAAAACCCTAAAATGGCCCACAGAGAAGCTTTCAGCACTGCGGCAAAAAATTGGGCCAATTTCCCGCCTTCTCACTGCAAAGGAGAAGCAGACAGCTGTAAAATTGTGCATCTGGATTGCCATCTAGAGTCTCCCAATGCTTCCCAGGTAAAACCATATCATTTTGTTTTCAGTGATAATAAAAAGGAAAAATATTCATGGAAATCCAAAATATTCACCAACTCTTAA 567 0.4198 MQVSVPCSSLSTVVTVRCGHCTSLLSVNMNKTSFVPFHLLASLSHVEPKEGSSEDGADKSLKNYSSYIVTYSDCEEETTPQSSSVVNKPPEKRQRTPSAYNIFIKEEIKRLKAENPKMAHREAFSTAAKNWANFPPSHCKGEADSCKIVHLDCHLESPNASQVKPYHFVFSDNKKEKYSWKSKIFTNS 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03202 188 Gene3D High mobility group box domain 77 144 IPR036910 -
Vimu11g03202 188 CDD HMG-box_SF 95 137 - -
Vimu11g03202 188 PANTHER PROTEIN YABBY 6-RELATED 2 144 IPR006780 GO:0007275
Vimu11g03202 188 Pfam YABBY protein 2 139 IPR006780 GO:0007275
Vimu11g03202 188 FunFam Axial regulator YABBY 4 82 148 - -
Vimu11g03202 188 SUPERFAMILY HMG-box 80 137 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03202 Vimu-Chr11 51565912 51566959 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03202 1 146 C2C2-YABBY Transcription Factor Family AT1G23420 59.236 3.57e-48 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Vimu11g03202 YABBY 4.1e-51 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03202 K25796 - gmx:100803001 245.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g03202 11 51565912 51566959 Vimu11g03202 11 51565912 51566959 ECH
Vimu7g03689 7 32168394 32182327 Vimu11g03202 11 51565912 51566959 PCT