Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03193 ATGGAAGACGAAATGTACGGCATGACACCGACGGCGGAGTACTCGGAGAAAGCCTTGATGACGCCAGAGACCATATTTCCGGCTGAGTACCACGGGTTCTTAATGTCCTCCGGTAGCCGGATTCCGATGTTCGGATCTGATGAGTTGCTCTCCGCCGCAGTGGCCATCACCGCCGCCAGCGGAGCTGAACCCTACCCGAACGTCGTTGTCGTACCTGAAATTCAGCGCCACCACGACAGCTCTTCCCTCATCAAAGCCAAAATCGCCTCTCACCCTCACTACCCTCGTCTCCTCCAAGCCTACATCGATTGCCAGAAGGTGGGAGCGCCTCCAGAAATCGCGTGTTTGTTAGAGGAAATCCGACGAGAAAACGACGTTTGCAAGAGGGACGTTGTTTACACGTGCGTTGGAGCCGATCCCGAACTCGACGAGTTCATGGAAACCTACTGTGACATGCTGGTGAAATACAAATCCGATCTGACGCGGCCTTTTGACGAAGCTACCACCTTCCTCAACAAGATCGAAACGCAGCTTACGGATCTCTGCACTGGTTTTTCTCTTCCAACCCTTTCCGTTATGATAATGACTCGTGACTGCTATTTAAACGTGTCCGTGTCCATTCTTGGGAACATTTTTCTTCTTGTGACTACGACGTTGTTATCTTTTGCTTCTGTTATGAAATCCATCTATGATCACGTTTTGGAAGTTGACTTTTCTGAAGCAAAGTTGTGCATGTCATCAATACTACTTCTGATTTTCGCCCTCGCCCTTCCTTTATGCTATGGCCAAATTGCTCATTATGTTAAGCTGGCATACTGTGCGTCTTGA 828 0.494 MEDEMYGMTPTAEYSEKALMTPETIFPAEYHGFLMSSGSRIPMFGSDELLSAAVAITAASGAEPYPNVVVVPEIQRHHDSSSLIKAKIASHPHYPRLLQAYIDCQKVGAPPEIACLLEEIRRENDVCKRDVVYTCVGADPELDEFMETYCDMLVKYKSDLTRPFDEATTFLNKIETQLTDLCTGFSLPTLSVMIMTRDCYLNVSVSILGNIFLLVTTTLLSFASVMKSIYDHVLEVDFSEAKLCMSSILLLIFALALPLCYGQIAHYVKLAYCAS 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03193 275 SMART KNOX1_2 82 126 IPR005540 GO:0003677|GO:0005634
Vimu11g03193 275 Pfam KNOX2 domain 135 182 IPR005541 GO:0003677|GO:0005634
Vimu11g03193 275 SMART KNOX2_2 132 183 IPR005541 GO:0003677|GO:0005634
Vimu11g03193 275 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 6 ISOFORM X1 79 182 - -
Vimu11g03193 275 Pfam KNOX1 domain 84 125 IPR005540 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03193 Vimu-Chr11 51333744 51342397 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03193 3 184 Homeobox Transcription Factor Family AT1G23380 61.658 2.72e-70 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03193 - - gmx:100786454 322.783
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g03193 11 51333744 51342397 Vimu11g03193 11 51333744 51342397 ECH
Vimu11g03193 11 51333744 51342397 Vimu11g03193 11 51333744 51342397 PCT