Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03188 ATGGATGTTATAGGATTTGGTTTTAGACCCACAGAAGAAGAACTTGTCGACTATTACCTCAGACACAGGTTGCTGGGTGATGATCCACAAGTCCACGTCATACCCGACATCGACCTTTGTGAAGTGGAACCTTGGCACGTACCGACGTTATTCGGGGAATCAGATGAGCAAGTCGATTTTCGAGAATGGTTTTTCTTCAGTCCTGTTGGTTTCAAGTATTCAAACAGTAAAAGGATTAACAGGACAACCAAGTGTGGCTTCTGGAAACCCACTGGAAAAGATCGTGAGATTAGGAGCTCCCACTCCAACACTCTCATTGCCACAAAAAAGACTCTCGTTTACTACAAAGGCCGCGTTTCACGTGGTGAGAAATCCAACTGGGTTATTCATGAATACCATGCTGTTACCTTTCACGAAAGCCAGAGGACTTTCGTTTTGTGCCGCTTGATGAAGAAACCTGGGGAAACAACTGAAGGTGGAGGTGATGAAGGGGAGAGCAGTGGAATCATGGTTCCTGGCTATGAGAATCAGTCGATAGCAGGAGGCATTCCTTCATTTCAGAGAAGTACTCTTACTGGAATGGAAACGACCTTACAGCAAGATGAAACGTCTTTTCCAAACTACTCATATCACGATGCCTATTTTAGAAATGAATCTAACATTGAGCATTTTTCATATGAAACTACTCAGGAGAAGGAATTCCTGAATTCTATTTTTGTTCCTGACGGTTATGTTAACAATGAACAAAATATAAATACCTTCTACAATACTTTCACCCAATCGGAGTCATTGAGAAAGGTATACCTTGAAAGTAGTGATACGGATGCTGAGGCCGTCTCCGAACAGGGTGATAATATTACGAATATTCCAACAGTGTTTAGTAGATATCTTAATGTAGACGAATACCATTCATCAAAAGGATTTGATTCTGAATTATCAGACGTGGATGTCGAGGATGGTGTAGGATACGGTTTTCGTCCCACCGATGAAGAACTTGTCCACTCTCACCTCAAACACAAGTTGCTAGATGATGATCCCCATGTCCATGTCTTGACTGACATAGATCTTTCCGATGTGGAACCTTCGGAAATACCAGAGATGTTAGCAAAATCAGTAATACCATTCAAAAACTCAGAATGGTTTTTCTTCAGTCCTGTTAAGTTGAAGTACTCAAATAGTGAAAGGTTTAAAAGGACAACCAAGAGTGGGTTCTGGAAACCCACGGGAGAACCCCGTGATGTTAGAACAGAGGACACCAACACTGTCATTGGGACTAAGAAGACTCTTGTTTTCTATATTGGTCGTGCTTCCAAAGCTGTCAAATCCAACTGGGTTATTCACGAATATCATGCTCTTAACTCAATCCAAAGCCAGAATGCTTTTGTGTTATGCCGCTTGAAAAAGAAACCTGGGAAAACGACCGAAGGAGGAACTACTGCACTGATCTGTGATGAAGAGGAATCCAGTAGAAGTGTGGTTTCTGACAATGAACATCAGGCAATAGCAGAAGGAGTTCCATCTGGAGATACTTCTAGCAGAACGGAAACAATCTGTCAGTTAACATATCAGGCAGAAAAAAACATCTCCCCAGCAGAACAGTCTCTAATTGATATTGAGAAGGATGAAGCATCTTTCCCAAACCCATCTAACGATGCCTATTTTAGAAAGGAAATCAACAATAGGCATATCCCATATGCACAGACTCCATTTGAACCTATGCATACTTCTTTAGGATCTACCCAAAATCCATTTGAAGCTGGATCTATGTTAACTCTTTTTGAACCTACACAACCTTCATTTGAAACTACAAAGACTCCTTTTGAAACTATGGAGACTCCTTTTGATACACGGGAGACTCTTTTAGGAACTTTGCAATCTCCTTTGGGAGCTATGCAGACTCCTTTAGGAGCTATGTATACTTCATTTGAAACTACGCAGACTTCTTTAGGATATATGTTAACTCCTTTAGAAACTACACAACCTTCATTTGAAACTATAAAGACTCCTCTTAAAACTATGGAGACTCCTTTTGATACTATGGAGACTCTTTCAGGAACTATGCAATCTCCTTTGGGAGCTATGTATACTTCATTTGAAACTACGCAGACTTCTTTAGGATCTATGTTAACTCCTTTAGAAACTACACAACCTTCATTTGAAACTATAAATACTCCTTTTGAAACTATGGAGACTCCTTTTGATACTATGGAGACTCTTTCAGGAACTATGCAGTCTCCTTTGGGAGCTATGCAGACTCCTTTAGGAGCTATGTATACTTCTTTTGAAACTATGCAGACTTCTTTAGGATCTATGTTAACTCCTTTTGAAGCTACACAACCTTCATTTGAAACTACAAATACTCCTTTTGAAACTATGGAGACTCCTTTGGAAGCTATGGTGACTCCTTTGGGAGCTATGTATACTTCATTTGAAACTACGCAAACTTCTTTAGGATCTATGTTAACTCCTTTTGAAACTACACAGACTTCATTTGAAACTTCGAAGTCTTTGGAAACTCCTTTTGAAACTATTGAGACTCCTTTAGGAGCTATGTATACTCCACCTGAAATGATGCATCCTCCATCTGAAACTACGCAGATTCCTTTAGGATCTATGCAGACTCCATTTGGAGTTACAAGTCCTTTAGCATCTAGGAAGATTCCTTTTGAAAGTAGGAAAATTCCATTTCAAAATACACATACTCCATCGCAGACTCCTTTTGAGTTCCCGAAATCATTGAAAAGGGCATATTGTGAAAGCACTTGCATAAATCCAGAAGTCGTCCTTAAACTGGACGCTTGTATTGATGATAGTTCAACTATGTGTACTAAATATCTTAATTCAGATGAATACCATTCATCAAAAATGTTTAAAACATCATATGATGTTGTAAATGGTGACACAGATCTTCTATTTTCCAACCAAGAAGCAAGTCAGAAACAAGAAAGTATATTTCAAGACAATTTACGGGGAGTGGAGACATCCTCATGTGACTCTACAGTATATAATCCTGAAGAGATCAATTGGAATGAAATATCTAGTTTTCCTTGCACTTAA 3057 0.3932 MDVIGFGFRPTEEELVDYYLRHRLLGDDPQVHVIPDIDLCEVEPWHVPTLFGESDEQVDFREWFFFSPVGFKYSNSKRINRTTKCGFWKPTGKDREIRSSHSNTLIATKKTLVYYKGRVSRGEKSNWVIHEYHAVTFHESQRTFVLCRLMKKPGETTEGGGDEGESSGIMVPGYENQSIAGGIPSFQRSTLTGMETTLQQDETSFPNYSYHDAYFRNESNIEHFSYETTQEKEFLNSIFVPDGYVNNEQNINTFYNTFTQSESLRKVYLESSDTDAEAVSEQGDNITNIPTVFSRYLNVDEYHSSKGFDSELSDVDVEDGVGYGFRPTDEELVHSHLKHKLLDDDPHVHVLTDIDLSDVEPSEIPEMLAKSVIPFKNSEWFFFSPVKLKYSNSERFKRTTKSGFWKPTGEPRDVRTEDTNTVIGTKKTLVFYIGRASKAVKSNWVIHEYHALNSIQSQNAFVLCRLKKKPGKTTEGGTTALICDEEESSRSVVSDNEHQAIAEGVPSGDTSSRTETICQLTYQAEKNISPAEQSLIDIEKDEASFPNPSNDAYFRKEINNRHIPYAQTPFEPMHTSLGSTQNPFEAGSMLTLFEPTQPSFETTKTPFETMETPFDTRETLLGTLQSPLGAMQTPLGAMYTSFETTQTSLGYMLTPLETTQPSFETIKTPLKTMETPFDTMETLSGTMQSPLGAMYTSFETTQTSLGSMLTPLETTQPSFETINTPFETMETPFDTMETLSGTMQSPLGAMQTPLGAMYTSFETMQTSLGSMLTPFEATQPSFETTNTPFETMETPLEAMVTPLGAMYTSFETTQTSLGSMLTPFETTQTSFETSKSLETPFETIETPLGAMYTPPEMMHPPSETTQIPLGSMQTPFGVTSPLASRKIPFESRKIPFQNTHTPSQTPFEFPKSLKRAYCESTCINPEVVLKLDACIDDSSTMCTKYLNSDEYHSSKMFKTSYDVVNGDTDLLFSNQEASQKQESIFQDNLRGVETSSCDSTVYNPEEINWNEISSFPCT 1018
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03188 1018 ProSiteProfiles NAC domain profile. 319 469 IPR003441 GO:0003677|GO:0006355
Vimu11g03188 1018 ProSiteProfiles NAC domain profile. 2 152 IPR003441 GO:0003677|GO:0006355
Vimu11g03188 1018 Gene3D NAC domain 11 156 IPR036093 GO:0003677|GO:0006355
Vimu11g03188 1018 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 236 - -
Vimu11g03188 1018 Pfam No apical meristem (NAM) protein 321 450 IPR003441 GO:0003677|GO:0006355
Vimu11g03188 1018 Pfam No apical meristem (NAM) protein 5 133 IPR003441 GO:0003677|GO:0006355
Vimu11g03188 1018 SUPERFAMILY NAC domain 4 152 IPR036093 GO:0003677|GO:0006355
Vimu11g03188 1018 SUPERFAMILY NAC domain 320 469 IPR036093 GO:0003677|GO:0006355
Vimu11g03188 1018 Gene3D NAC domain 328 473 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03188 Vimu-Chr11 51217515 51223771 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03188 321 476 NAC Transcription Factor Family AT4G35580 44.720 1.72e-34 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vimu11g03188 NAM 1.6e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03188 - - vra:106778155 1294.26