Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03187 ATGTTTCATTCAACCTACAAACAAAGATTTCAGTGTTCACAAAAATCAATGGGTAAAATTGTTGGTGTCGGTTTCCGTCCTACGGAACAAGAACTCGTCGATTTCTACCTCAAACACAAGTTGCTGGCTGATGATTCCCGTGTCGACGTTATCCCTGTCATTGATCTCTGCCATGTGGAACCTTCCGATGTACCAGGGATACTTGCAAAATCACGGATACGATTTGGTGACCCAGACTGGTTTTTCTTTAGTCCGGTCGATTTCAAGTATGCAAACAGTAAAAGGGTTAACAGGAAAACCGAGAAAGGCTTCTGGAAAGCCACTGGAAAAGACCGTGATATTAGGAGCTGGAAAACCAACGATCTGATTGCCACAAAGAAGACTCTTGTATACTACACAGGAAGTGTTTCCTGTGGTGTCAAGGACATCTGGGTTATTCACGAATATCACGCTGTTACCTTTCCTGAAAGCAAGAGGTATTTTGTTTTATGCCGCTTGATGAGGAAATCTGGGAAAACAATTGAAGGGGGGACCGATCCAGTAGTCTGTGGTGAAGAGGAGCCCAGTGAACTCAATGTTTCTGACTACGAAAATCAGGCAACATCTGGAGGTACGGTTACAGGAGCTGAACCAATCTTTCAGGCTAACTCTCAGTCAGAGACATACGTCTCCCAAATCCCACAGTCTTCAACAGAAGAAGCATCATCTTTTCCAGATTATCCATTAAACAATGCCTATTTTAGAAATGAAAATTGTTTTATACAATTTTCATCTACATCTACAAAGGAAGATGAGTTCCTAAATCGAATTATAGCTGACGAAAATTTAGACATTGAAGAAGATAATTTTTATCCTTCAGTCAATAATTTTTCTTCAAAGGATATAAATATTGTGGATAGTTCATCTATTTACAATGATTATTCTAATAATGAGGAATATCATTCATCAAAAAGATTTAAATTATCACAAGATGTTATTGATGATGCATCATCAAGAAATAAAAAAGAGTATGATTCTAGATAA 1023 0.3812 MFHSTYKQRFQCSQKSMGKIVGVGFRPTEQELVDFYLKHKLLADDSRVDVIPVIDLCHVEPSDVPGILAKSRIRFGDPDWFFFSPVDFKYANSKRVNRKTEKGFWKATGKDRDIRSWKTNDLIATKKTLVYYTGSVSCGVKDIWVIHEYHAVTFPESKRYFVLCRLMRKSGKTIEGGTDPVVCGEEEPSELNVSDYENQATSGGTVTGAEPIFQANSQSETYVSQIPQSSTEEASSFPDYPLNNAYFRNENCFIQFSSTSTKEDEFLNRIIADENLDIEEDNFYPSVNNFSSKDINIVDSSSIYNDYSNNEEYHSSKRFKLSQDVIDDASSRNKKEYDSR 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03187 340 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 22 264 - -
Vimu11g03187 340 Gene3D NAC domain 28 173 IPR036093 GO:0003677|GO:0006355
Vimu11g03187 340 ProSiteProfiles NAC domain profile. 19 169 IPR003441 GO:0003677|GO:0006355
Vimu11g03187 340 SUPERFAMILY NAC domain 10 169 IPR036093 GO:0003677|GO:0006355
Vimu11g03187 340 Pfam No apical meristem (NAM) protein 21 150 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03187 Vimu-Chr11 51206428 51208262 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03187 21 176 NAC Transcription Factor Family AT4G35580 47.531 9.54e-39 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vimu11g03187 NAM 3.9e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03187 - - var:108346924 604.364