Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03184 ATGCTATCAAACCCACTTCACTGTTGTTTGATTCTTTTCTTGTTTCGATTTCTGATGCCAGCGAAGTCAGTGATCAAATCCGATGACCCAGAGTGGTTTTTCTTCAGTTCTGTGGATTACAAGTACTCCAATAGTAAAAGGGTCAACAGGACCACCGAACATGGCTTCTGGAAAGCCACTGGAAATGACCGTAAAATTCGGATTGGTGGCACTAACAATGTCATTGGGACAAAGAAGACTCTTGTTTTCCACCAAGGCCGTGTTCCCCGTGGTGTCAAGACCAACTGGGTTATTCATGAATATCATGCTCTTACCTCCCATGAAAGCCAGGTTGGTTTGCTTTTCCATGAAAATTTTCTGAAACGTTTCTGCCAAATTGCATGGTGTGATTGCCAAATTCACCTGGCAGGATTAGGATTTGTTGCTGTTGTTGGGTGTTGTTTAGATATGTTTTGTCACAACACTATGTACTCTTTAGGCTTTGATATAATTTCCTATCCTATTGGTTGTTCTGAAGGTTATTGGATACTTTGTTTGAATCCCATGTTTTTAATTTCGTCAGTATCTGGTCATGACCTAATTTTCTCCATTTGGCCTTGTTTTGATGATGACGAAAGGGGCATTTGGGAGAATTTCTTTCAATGA 645 0.4047 MLSNPLHCCLILFLFRFLMPAKSVIKSDDPEWFFFSSVDYKYSNSKRVNRTTEHGFWKATGNDRKIRIGGTNNVIGTKKTLVFHQGRVPRGVKTNWVIHEYHALTSHESQVGLLFHENFLKRFCQIAWCDCQIHLAGLGFVAVVGCCLDMFCHNTMYSLGFDIISYPIGCSEGYWILCLNPMFLISSVSGHDLIFSIWPCFDDDERGIWENFFQ 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03184 214 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 26 105 - -
Vimu11g03184 214 ProSiteProfiles NAC domain profile. 1 136 IPR003441 GO:0003677|GO:0006355
Vimu11g03184 214 Gene3D NAC domain 17 132 IPR036093 GO:0003677|GO:0006355
Vimu11g03184 214 SUPERFAMILY NAC domain 22 117 IPR036093 GO:0003677|GO:0006355
Vimu11g03184 214 Pfam No apical meristem (NAM) protein 26 102 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03184 Vimu-Chr11 51202095 51202739 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03184 19 113 NAC Transcription Factor Family AT5G04410 53.684 1.34e-29 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vimu11g03184 NAM 1.2e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03184 - - gmx:106796386 172.555