Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03176 ATGGACTTGTCTTTTAACCTCCTTACTGGTGTAATTCCAGTAGAGCTCACAGAACTCCCAGCACTGGCATCGCAACAGGCAAATGATAAAGTAGAAAGGACTTATCTTGAGCTACCTGTCTTTGTAAATGCAAATAATGTTTCCCTACTGCAATATAATCAGCTTTCAGCCCTTCCCCCAGCAATATATCTGGGAAACAATCACCTTAATGGCAGTATCCCTATTGAGATTGGAAAACTCAAAGCCCTTCTTCAGCTGGACGTGAAAAATAACAGCTTCTCTGGTGATATACCAGTTCAGTTTTCAAACCTGACTAACTTAGAGAAACTAGACCTCTCAGGAAACCAACTATCTGGTGAAATTCCTGATTCCCTTAGAAGATTACATTTCTTGTCTTTTTTCAGTGTAGCCTTCAATAATCTTCAAGGACAGATACCAACTGGTGGTCAATTTGATACTTTCTCCTATTCCAGCTTCGAAGGAAACTCGCAATTGTGCGGTCCAGTCATTCAGCGTTCTTGTTCTCAACAAAATACTTCTACTAATACTACTGCAGCTAGTCACAGCTCAAACAAAAGAAATAATGAAACCAAGGACCTCACCATATTTGACATCCTAAAAGCCACTGAAAATTTCAGTCAGGCAAACATAATAGGATGTGGGGGTTTTGGTTTGGTTTATAAAGCAACACTACCAAATGGAACCACAGTTGCCATCAAGAAACTTTCAGGAGACTTGGGCCTCATGGAAAGGGAATTCAAAGCAGAAGTAGAGGCTTTGTCAACAGCACAGCATGAGAATCTGGTGGCATTAAAAGGCTATTGTGTGCATGAGGGATTCCGGCTTCTCATGTATACATACATGGAAAATGGAAGCCTTGATTACTGGTTACATGAAAAGCCTGATGGTGCTTCGCAACTTGATTGGCCAACTCGCTTGAAGATTGCAAAAGGTGCAAGCTGTGGCTTGGCTTATTTGCATCAGATATGTGAACCACACATAGTGCATCGCGATATAAAGTCAAGCAACATACTCCTTAATGAAAATTTTGAGGCACATGTTGCTGATTTTGGGTTGTCCAGGTTGATTCTTCCATATCATACTCATGTTACCACTGAACTTGTTGGTACATTAGGCTATATTCCCCCTGAGTATGGACAAGCATGGGTGGCTACTCTGAGAGGAGATGTGTACAGCTTGGGTGTTGTCATGCTTGAGCTGCTAACTGGGAGGAGGCCTGTAGATGTATGCAAGCCAAAAATGTCAAGGGAGTTGGTTGGCTGGGTTCAACAAATGAGAATTGAAGGAAAACAAGATCAAGTATTTGACCCTATTCTGAGAGGGAAGGGATTTGAAGGACAGATGCTGAAGGTGCTGGATGTGGCTTGCATGTGTGTCAGCCACAATCCTTTCAAGAGACCAAGCATCAGAGAAGTTGTTGAATGGCTGAAGAATGTAGCATCCAACACAGAAATAAAGACTTGA 1485 0.4195 MDLSFNLLTGVIPVELTELPALASQQANDKVERTYLELPVFVNANNVSLLQYNQLSALPPAIYLGNNHLNGSIPIEIGKLKALLQLDVKNNSFSGDIPVQFSNLTNLEKLDLSGNQLSGEIPDSLRRLHFLSFFSVAFNNLQGQIPTGGQFDTFSYSSFEGNSQLCGPVIQRSCSQQNTSTNTTAASHSSNKRNNETKDLTIFDILKATENFSQANIIGCGGFGLVYKATLPNGTTVAIKKLSGDLGLMEREFKAEVEALSTAQHENLVALKGYCVHEGFRLLMYTYMENGSLDYWLHEKPDGASQLDWPTRLKIAKGASCGLAYLHQICEPHIVHRDIKSSNILLNENFEAHVADFGLSRLILPYHTHVTTELVGTLGYIPPEYGQAWVATLRGDVYSLGVVMLELLTGRRPVDVCKPKMSRELVGWVQQMRIEGKQDQVFDPILRGKGFEGQMLKVLDVACMCVSHNPFKRPSIREVVEWLKNVASNTEIKT 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03176 494 SUPERFAMILY L domain-like 2 168 - -
Vimu11g03176 494 Pfam Protein kinase domain 213 481 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g03176 494 ProSiteProfiles Leucine-rich repeat profile. 106 128 IPR001611 GO:0005515
Vimu11g03176 494 FunFam Leucine-rich repeat receptor-like protein kinase 288 494 - -
Vimu11g03176 494 ProSitePatterns Serine/Threonine protein kinases active-site signature. 334 346 IPR008271 GO:0004672|GO:0006468
Vimu11g03176 494 Gene3D Ribonuclease Inhibitor 1 182 IPR032675 -
Vimu11g03176 494 Gene3D Phosphorylase Kinase; domain 1 183 287 - -
Vimu11g03176 494 Pfam Leucine Rich Repeat 106 127 IPR001611 GO:0005515
Vimu11g03176 494 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 2 486 - -
Vimu11g03176 494 ProSiteProfiles Protein kinase domain profile. 212 483 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g03176 494 Gene3D Transferase(Phosphotransferase) domain 1 288 494 - -
Vimu11g03176 494 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 48 174 - -
Vimu11g03176 494 FunFam Leucine-rich repeat receptor protein kinase MSP1 174 287 - -
Vimu11g03176 494 SMART serkin_6 212 483 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g03176 494 ProSitePatterns Protein kinases ATP-binding region signature. 218 241 IPR017441 GO:0005524
Vimu11g03176 494 SUPERFAMILY Protein kinase-like (PK-like) 196 483 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03176 Vimu-Chr11 51117119 51118810 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03176 66 491 Receptor kinase-like Gene Family AT5G45780 35.941 1.18e-93 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Vimu11g03176 Pkinase 1.2e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03176 - - lja:Lj3g3v2532290.1 706.827