Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03174 ATGATGACCACCAACACAAGTCCCAAAAACAACAACGTTGGAGAATTTGGGGACACCACTCTCACCAAGGTTTTTGTTGGGGGTCTGGCATGGGAGACTCCCAAGGATGCCCTCAGAGACCATTTTGAAAAGTATGGTGAGATCCTTGAAGCTGTCATCATTTCTGATAAGCTTACTGGCAAATCCAAAGGCTATGGCTTTGTGACTTTCAAAGAGGCTGAGGCTGCCAAAAAAGCTTGCGAGGACTCTGCAACTCTTGTTATCAATGGCCGTCGAGCCAACTGCAATCTGGCTTTCTTAGGTGCTCGTCGTCCAAGGTCTTCTTCCACTGCTTCACCACCTCCACACCCACAAGGAGGATCAAACAGTGGAGTGGTGGTGAAGAACAATACAGCAGGGAATCACGTGCAGCCATATTATCATCCACTCAGAACAACTGCTATGCCCTTCCACAATCACCCTCTTCCTTTCTATGGGTACACTCCAACCTACATTGTGACAGACATAAACTACAATTACAACCAGAAACTGAGCTATGGCAATGGTGGGGCCTACCAGCAGATGTCCCATGTGTACCCTAGGCAGGGGATTGTGGGTGGCAACACAGTAATGCCAGTGTACCCTCTCTATCAGTATCATCATCCAACGGAGACCATTGGCCTACCAGCTCACAACTTTTATCCAACGGCACCCTGGGCCCCATTCACCATCATTTCCAAACCATCCTCTATAATTCCTCATACAGGTACAGTTGGCACGGGTGAGTGCTTTAAAAGGGTTGTCTGA 786 0.4822 MMTTNTSPKNNNVGEFGDTTLTKVFVGGLAWETPKDALRDHFEKYGEILEAVIISDKLTGKSKGYGFVTFKEAEAAKKACEDSATLVINGRRANCNLAFLGARRPRSSSTASPPPHPQGGSNSGVVVKNNTAGNHVQPYYHPLRTTAMPFHNHPLPFYGYTPTYIVTDINYNYNQKLSYGNGGAYQQMSHVYPRQGIVGGNTVMPVYPLYQYHHPTETIGLPAHNFYPTAPWAPFTIISKPSSIIPHTGTVGTGECFKRVV 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03174 261 MobiDBLite consensus disorder prediction 104 128 - -
Vimu11g03174 261 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 22 100 IPR000504 GO:0003723
Vimu11g03174 261 Gene3D - 2 112 IPR012677 -
Vimu11g03174 261 SMART rrm1_1 23 96 IPR000504 GO:0003723
Vimu11g03174 261 PANTHER BOULE-RELATED 9 227 - -
Vimu11g03174 261 SUPERFAMILY RNA-binding domain, RBD 18 121 IPR035979 GO:0003676
Vimu11g03174 261 FunFam Putative RNA-binding protein ARP1 16 106 - -
Vimu11g03174 261 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 24 91 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03174 Vimu-Chr11 51083429 51085090 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03174 18 164 C2H2 Transcription Factor Family AT2G19380 31.169 3.34e-16 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03174 - - vra:106778170 525.398