Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03172 ATGAATGCCCTGCAAACTTCATCTGTAACTGACTTGAGTACATTTGATACACCTACGGCCCCGATAAGTCTTAAACCTCCACCTTTTGATCGTCATAAATCATTTGACGAGGATGAGTTTTCAGTGAAGCCCGCTACTGTCATTAAGCCCACTACAGTAAAGAAGAACGTCACAGCTCCTACAAATGTAAAATCTTATTCTGTAGCTGACCTGCAGATTGCTACTGGAAGCTTCAGTGTGGATCAACTTATTGGTGAGGGGTCTTTTGGACGTGTATATCGAGCTCAATTTGATGATGGAAAGGTTCTTGCTGTTAAGAAGATAGATTCCTCTGTCCTTCCTAATGATTTGTCTGATGATTTTGTGGAACTGGTTTCAAGCATATCCCATTTGCACCATCCCAATGTGACAGAGCTTGTAGGTTACTGTTCAGAGCATGGACAGCACTTACTAGTCTACGAGTTTCACAAAAACGGGTCACTGCATGACTTCCTCCACCTACCTGACGACTATAGTAAACCATTGATATGGAATTCACGCGTGAAGATTGCTTTGGGGATTGCACGTGCTTTAGAGGCTAGACTTCAAGCATCAATGCATACTTTTGCCGAGAAACCACAACCTAACTCTATTTACGTTTTTCCTAGGTACCTACATGAAGTTTGTTCACCATCTGTTGTACATAAGAATATAAAGTCAGCCAACATATTGCTTGATACAGATCTCAATCCTCATCTTTCTGACAGTGGACTGGCAAGCTATATTCCAAATGCAAATCAGGTATTGAACAATAATTCTGGATCTGGGTATGAAGCTCCCGAAGTTGTCATGTCTGGCCAATACAGTCTTAAGAGTGATGTCTTTAGTTTTGGAGTTATCATGTTGGAACTTCTTAGTGGACGGAAACCATTTGATAGCTCAAGGCCAAGGTCTGAGCAGGGTTTGGTTCGATGGGCAACACCTCAACTCCATGATATCGATGCTCTGGCTAAAATGGTTGATCCTGCATTAGAAGGACTATACCCTGTGAAGTCTCTTTCTCGATTTGCAGATGTTATTGCTCTTTGTGTTCAGCCGGAGCCGGAATTCCGACCACCTATGTCAGAAGTGGTTCAAGCGCTGGTTCGATTAGTGCAGCGAACTAACATGAGTAAGAGGACGACGTTTGTAACTGATCAAGGAGTATCCAACCGAGGGGGAGATAACCAAGAATCACAAGACATGTAA 1227 0.4271 MNALQTSSVTDLSTFDTPTAPISLKPPPFDRHKSFDEDEFSVKPATVIKPTTVKKNVTAPTNVKSYSVADLQIATGSFSVDQLIGEGSFGRVYRAQFDDGKVLAVKKIDSSVLPNDLSDDFVELVSSISHLHHPNVTELVGYCSEHGQHLLVYEFHKNGSLHDFLHLPDDYSKPLIWNSRVKIALGIARALEARLQASMHTFAEKPQPNSIYVFPRYLHEVCSPSVVHKNIKSANILLDTDLNPHLSDSGLASYIPNANQVLNNNSGSGYEAPEVVMSGQYSLKSDVFSFGVIMLELLSGRKPFDSSRPRSEQGLVRWATPQLHDIDALAKMVDPALEGLYPVKSLSRFADVIALCVQPEPEFRPPMSEVVQALVRLVQRTNMSKRTTFVTDQGVSNRGGDNQESQDM 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03172 408 MobiDBLite consensus disorder prediction 1 20 - -
Vimu11g03172 408 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 216 388 - -
Vimu11g03172 408 ProSitePatterns Protein kinases ATP-binding region signature. 84 107 IPR017441 GO:0005524
Vimu11g03172 408 SUPERFAMILY Protein kinase-like (PK-like) 57 374 IPR011009 -
Vimu11g03172 408 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 44 155 - -
Vimu11g03172 408 PANTHER OS01G0253100 PROTEIN 216 384 - -
Vimu11g03172 408 Pfam Protein tyrosine and serine/threonine kinase 80 192 IPR001245 GO:0004672|GO:0006468
Vimu11g03172 408 Gene3D Phosphorylase Kinase; domain 1 41 155 - -
Vimu11g03172 408 Gene3D Transferase(Phosphotransferase) domain 1 157 398 - -
Vimu11g03172 408 ProSiteProfiles Protein kinase domain profile. 78 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g03172 408 Pfam Protein kinase domain 216 372 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g03172 408 MobiDBLite consensus disorder prediction 388 408 - -
Vimu11g03172 408 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03172 Vimu-Chr11 51063434 51066909 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03172 2 390 Strubbelig Receptor Gene Family AT1G53730 70.513 0.0 535
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Vimu11g03172 Pkinase 2.6e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03172 - - gmx:100780323 685.256