Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03168 ATGAGCAGTACCATTCTCAAAGCCATTGCTTTTCTTGTTCAATCATTGCAAAACTACATCATCCAGCATTCTGCAGTGATCGAAAATGAAGATCAGGAAAGTGATTATTGTTCAGTGTGTCTGAGCCAAATCTGTAAAGGGGAAAAAGTTAGGTCTCTTCCAGTATGCAATCACAGCTACCATGCTGATTGTATTGCTGCTTGGCTTAAGAACAATACCACATGCCCTCTTTGCAGGAACAAAATCACTGATCACAGCCTCCAAAAGCATAAACAGCTCAAGAACTTAGCAGAATCTCTGTTTAATCTCATACAGAGTTTCACAGATCTGTTGGTAGCTTTTCTCTACATGCTACTTCCATCCACCGTCACTCAGAGTTTCCCTTTGGTTCACTGA 396 0.4091 MSSTILKAIAFLVQSLQNYIIQHSAVIENEDQESDYCSVCLSQICKGEKVRSLPVCNHSYHADCIAAWLKNNTTCPLCRNKITDHSLQKHKQLKNLAESLFNLIQSFTDLLVAFLYMLLPSTVTQSFPLVH 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03168 131 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 85 IPR013083 -
Vimu11g03168 131 SUPERFAMILY RING/U-box 27 84 - -
Vimu11g03168 131 ProSiteProfiles Zinc finger RING-type profile. 37 79 IPR001841 -
Vimu11g03168 131 SMART ring_2 37 78 IPR001841 -
Vimu11g03168 131 Pfam Ring finger domain 36 79 IPR001841 -
Vimu11g03168 131 PANTHER RING-H2 FINGER PROTEIN ATL16 26 92 IPR044600 GO:0016567|GO:0016740
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03168 Vimu-Chr11 51038214 51038609 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03168 37 99 C3H Transcription Factor Family AT1G53820 42.857 6.61e-16 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03168 - - gmx:100500375 202.601