Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03167 ATGGGTTCAACTCCGACCGCCGTGTCTGATGACAACTCGTTGGGTGAATCTGATACAATTGAGATAACTGGGAAGGTAATGGTGGTGGCTATAATATTCCTTTTCATGGTGGTTGTGTTTGTTCTTGTGCTTCATCTCTATGCAAAATGGTTCTGGTGGAACATGGAGGAGAACGCCGCCCCTCAGCCTCGCCAGCGGCGGCGGAGGCGCCGCCGGTTTGTCTTCGCCCCCGGGCAAGACCCGGTGGTCTATGAGAGTCACCAAGTTGGGCTTGACCCTTCAGTTTTAAAGTCCTTGCCAGTGTTGGTGTTCCAACCGGAGAACTTCAAAGAAGGTTTGGAGTGTGCAGTTTGTCTCTCTGAGATTATTGAAGGGGAAAAGGCCAGGATTTTGCCCAAATGCAATCATGGTTTTCATGTGGATTGCATTGACATGTGGTTCCATTCGCACTCCACTTGCCCTCTTTGTAGGAACCCTGTTGGTTTTGAATCCTCTAAAACAAGTGAAGAGAATGATTTCTCAGGGAACACTGAATCAGCATCATCATCATCATCATCAATTGAAGAGAATTCAGGTGCTGTGAATGGTTTACAGTCTTCAATTTTTCCCACAAATGTGTTGGTTTGGGGGAACCACACACAAGTTAGTTCTTTTGTGGTTTCCTTGGAAGAGGAAGAAGGGAGTTCTCAGCAGCCAACTTCTCTTCCATCATCTACACCACCTTCTTCTTCTTCTTCAGATGGTGGCAATGTTAATGGTAGATGTCATGGAATGTTGGTGATTGATATTCCAAGTGAGTGCACTTCCTCCTCTTTATCCCCTTCTGGAAGTAGGTGTGTTGAAGATGAGATGAAATCACCAATGGCTGCCACATTGAGGTCATTTAAGAGGCTTTTGAGCCGGGACAAAAAGTTAAGTCCTTGTAGTCCAAGTTCTGTAGATGTGGAACAAGCACAAAGCTAG 963 0.46 MGSTPTAVSDDNSLGESDTIEITGKVMVVAIIFLFMVVVFVLVLHLYAKWFWWNMEENAAPQPRQRRRRRRRFVFAPGQDPVVYESHQVGLDPSVLKSLPVLVFQPENFKEGLECAVCLSEIIEGEKARILPKCNHGFHVDCIDMWFHSHSTCPLCRNPVGFESSKTSEENDFSGNTESASSSSSSIEENSGAVNGLQSSIFPTNVLVWGNHTQVSSFVVSLEEEEGSSQQPTSLPSSTPPSSSSSDGGNVNGRCHGMLVIDIPSECTSSSLSPSGSRCVEDEMKSPMAATLRSFKRLLSRDKKLSPCSPSSVDVEQAQS 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03167 320 MobiDBLite consensus disorder prediction 220 251 - -
Vimu11g03167 320 MobiDBLite consensus disorder prediction 166 191 - -
Vimu11g03167 320 FunFam RING-H2 finger protein ATL3 83 162 - -
Vimu11g03167 320 CDD RING-H2_EL5-like 114 157 - -
Vimu11g03167 320 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 82 161 IPR013083 -
Vimu11g03167 320 SUPERFAMILY RING/U-box 95 163 - -
Vimu11g03167 320 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 22 225 - -
Vimu11g03167 320 MobiDBLite consensus disorder prediction 220 255 - -
Vimu11g03167 320 Pfam Ring finger domain 114 157 IPR001841 -
Vimu11g03167 320 ProSiteProfiles Zinc finger RING-type profile. 115 157 IPR001841 -
Vimu11g03167 320 SMART ring_2 115 156 IPR001841 -
Vimu11g03167 320 MobiDBLite consensus disorder prediction 267 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03167 Vimu-Chr11 51032250 51033212 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03167 21 303 C3H Transcription Factor Family AT1G53820 42.623 1.96e-62 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03167 - - gmx:100775523 434.876
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g03167 11 51032250 51033212 Vimu11g03167 11 51032250 51033212 ECH
Vimu10g00043 10 293255 294109 Vimu11g03167 11 51032250 51033212 PCT