Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03162 ATGACTAACCCAAAACTTCCCTACACCGGAATCTCAGATTCCGGCAACCACACTTCTCTCTCTAAAAAATCTTTCTACAAGAAGAAGCTTTTCCTCACTCTTTTCGCCACCCTCCTGGTGGCAGCCTCCGTCGCGGCCATAGTCGCCGGAGTGAAAAACAAAAATGAAAAGTCCGACAGCAGCAGCAGCACTCCTCTGTCCCTCTCCCACCAGTCCCACGCGATTCTTAAGAGCGCGTGTAGTTCTACATTCTACCCAGAACTCTGCTTCTCTGCCGTGGCTTCAGAACCCAACGTCACTCACAAAGTAACCTCTCACCGTGACGTCATTAAACTCTCCCTCGACATCACCACGCGCGCGGTGGAGCACAACTACTTCACCGTGAAGAAGCTCACCACCAAACACGGCCTAACGAAGCGCGAGAAAACCGCGCTACACGATTGTCTCGAAACCATTGACGAGACCCTCGACGAGCTGAAAGAGGCTAAGCGCGATCTCGAGCTCTACCCCAACAAGAAAACACTGTACCAGCACGCCGACGATCTGAAAACCTTAATCAGCGCCGCCATCACCAACCAGGTCACGTGCCTCGACGGCTTCTCGCACGAGGACGCCGATAAGCGCATCCGGAAGGCTCTGGAAAAAGGCCAGGTGCACGTGGAACACATGTGCAGCAACGCACTGGCCATGACCAAGAACATGACCGACACCGACATTGCCAACTTCGAACAGAGCACGAAGCTCCCAGACAACAACGTTGGCCAAAACAGAAAGCTCTTGGCCGAGGAGAGCAATGCCGGAGGTGATGATGGTGTTGTCTGGCCGGAATGGATTTCTGCTACCGACAGGAGACTGCTTCAGGCAACGGCAGTGAAGGCCGATGTGGTGGTGGCTGCGGACGGCAGTGGAGACTTTAAGACGGTGTCGGAAGCGGTGGACGCTGCTCCGTTGAAGAGTAGTAAAAGATTTGTTATAAGGATAAAGGCTGGAGTTTACAGAGAAAATGTAGAAGTTCCAAAGAAGAAGACCAACATCATGTTCTTGGGTGATGGAAGAACCACCACCATCATCACCGCCAGCAGAAACGTCGTCGACGGTAGCACCACCTTCCACTCCGCCACCGTCGCTGTAGTGGGTGAAAATTTCCTAGCTAGGGACATAACATTCCAAAACACAGCAGGACCCTCAAAGCATCAAGCAGTAGCTCTAAGAGTAGGAGGAGACCTATCAGCATTTTACAACTGTGACATCTTAGCATACCAAGACACTCTCTATGTCCACAACAACCGTCAATTCTTTGTGAAGTGTCTCGTTGCAGGGACCGTTGATTTCATCTTCGGTAACTCTGCAGTGGTGTTCCAAGACTGTGACATCCATGCCAGGCGTCCGGACTCGGGTCAGAAGAACATGGTGACGGCCCAAGGAAGGGTAGACCCTAACCAAAACACTGGGATTGTGATCCAGAAGAGTAGGATCGGTGCAACTTCGGATTTGGAGTCTGTGAAGAAGAGTTTCAAGACCTATCTTGGGAGACCATGGAAGGAGTATTCAAGAACTGTGATCATGCAGAGCAGTATCGGTGATCTGATTGATCCTGTTGGGTGGCATGAGTGGAGTGGCAACTTTGCATTGAGCACTTTGGTGTATAGGGAATATCAGAACACTGGGCCTGGTGCTGGAACCTCTAATAGGGTATCTTGGAAAGGGTTTAAAGTGATAACTGATGCTGCTGAAGCCCGGGCTTTTACCCCTGGAAGCTTCATTGGAGGGTCTAGCTGGTTGGACTCTACGGGCTTTCCTTTCTCTCTTGGGTTGTAA 1818 0.5121 MTNPKLPYTGISDSGNHTSLSKKSFYKKKLFLTLFATLLVAASVAAIVAGVKNKNEKSDSSSSTPLSLSHQSHAILKSACSSTFYPELCFSAVASEPNVTHKVTSHRDVIKLSLDITTRAVEHNYFTVKKLTTKHGLTKREKTALHDCLETIDETLDELKEAKRDLELYPNKKTLYQHADDLKTLISAAITNQVTCLDGFSHEDADKRIRKALEKGQVHVEHMCSNALAMTKNMTDTDIANFEQSTKLPDNNVGQNRKLLAEESNAGGDDGVVWPEWISATDRRLLQATAVKADVVVAADGSGDFKTVSEAVDAAPLKSSKRFVIRIKAGVYRENVEVPKKKTNIMFLGDGRTTTIITASRNVVDGSTTFHSATVAVVGENFLARDITFQNTAGPSKHQAVALRVGGDLSAFYNCDILAYQDTLYVHNNRQFFVKCLVAGTVDFIFGNSAVVFQDCDIHARRPDSGQKNMVTAQGRVDPNQNTGIVIQKSRIGATSDLESVKKSFKTYLGRPWKEYSRTVIMQSSIGDLIDPVGWHEWSGNFALSTLVYREYQNTGPGAGTSNRVSWKGFKVITDAAEARAFTPGSFIGGSSWLDSTGFPFSLGL 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03162 605 Gene3D Invertase/pectin methylesterase inhibitor family protein 72 235 IPR035513 -
Vimu11g03162 605 FunFam Pectinesterase 288 605 - -
Vimu11g03162 605 Pfam Pectinesterase 294 590 IPR000070 GO:0030599|GO:0042545
Vimu11g03162 605 Pfam Plant invertase/pectin methylesterase inhibitor 76 230 IPR006501 GO:0004857
Vimu11g03162 605 Gene3D - 288 605 IPR012334 -
Vimu11g03162 605 CDD PMEI-like_3 78 235 - -
Vimu11g03162 605 ProSitePatterns Pectinesterase signature 1. 319 338 IPR018040 -
Vimu11g03162 605 NCBIfam pectinesterase inhibitor domain 66 234 IPR006501 GO:0004857
Vimu11g03162 605 SMART PMEI_2 71 230 IPR006501 GO:0004857
Vimu11g03162 605 FunFam Pectinesterase 72 235 - -
Vimu11g03162 605 PANTHER PECTINESTERASE 43 595 - -
Vimu11g03162 605 Coils Coil 145 169 - -
Vimu11g03162 605 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 75 235 IPR035513 -
Vimu11g03162 605 SUPERFAMILY Pectin lyase-like 289 604 IPR011050 -
Vimu11g03162 605 ProSitePatterns Pectinesterase signature 2. 438 447 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03162 Vimu-Chr11 50987330 50991845 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03162 20 605 Carbohydrate Esterase AT3G14310 71.572 0.0 838
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03162 K01051 - pvu:PHAVU_010G123100g 1039.64