Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03161 ATGATGAATTTATTACTTTTTGCAGCTGTTAAAGGCAAGGGATTCATAGCCAAAGACATAGGGTTTGTGAACAATGCAGGTGCTTCAAAGCACCAGGCTGTGGCATTGAGATCTGGGTCAGATCGCTCTGTGTTCTTCAGATGCTCATTTGATGGCTTCCAAGATACCCTCTATGCTCATTCCAACCGCCAATTCTACCGTGACTGTGACATTACAGGCACCATAGACTTCATATTTGGCAATGCAGCAGTTGTGTTCCAAAACTGCAAAATAATGCCTAGACAGCCCCTACCAAACCAGTTCAACACCATCACAGCTCAGGGAAAGAAAGACCCTAACCAGAACACTGGAATTATAGTTCAGAAATCAACAATCACTCCCCTGGGCAACAATCTCACTGCTCCCACATACCTTGGCAGGCCATGGAAAGATTTCTCCACCACTGTCATCATGAAATCTGATATTGGGTCATTCCTGAATCCGGTGGGGTGGATGAGTTGGGTCGCTAATGTGGAACCTGCAAGTACCATCTTCTATGCAGAATATCAGAATACTGGGCCAGGAGCTGACGTGTCCAAGAGGGTCAAATGGGCCGGTTATAAGCCCACTCTCGCGGACACCGATGCAGATAGGTTCACTGTGGAGTCCTTTATCCAAGGCCCTGATTGGTTGCCTAATGCAGCTGTGCAGTTTGATTCCACCTTGTGA 708 0.4689 MMNLLLFAAVKGKGFIAKDIGFVNNAGASKHQAVALRSGSDRSVFFRCSFDGFQDTLYAHSNRQFYRDCDITGTIDFIFGNAAVVFQNCKIMPRQPLPNQFNTITAQGKKDPNQNTGIIVQKSTITPLGNNLTAPTYLGRPWKDFSTTVIMKSDIGSFLNPVGWMSWVANVEPASTIFYAEYQNTGPGADVSKRVKWAGYKPTLADTDADRFTVESFIQGPDWLPNAAVQFDSTL 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03161 235 SUPERFAMILY Pectin lyase-like 9 233 IPR011050 -
Vimu11g03161 235 Gene3D - 6 235 IPR012334 -
Vimu11g03161 235 ProSitePatterns Pectinesterase signature 2. 71 80 IPR033131 -
Vimu11g03161 235 PANTHER PECTINESTERASE 9 225 - -
Vimu11g03161 235 Pfam Pectinesterase 9 220 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03161 Vimu-Chr11 50978087 50978885 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03161 9 229 Carbohydrate Esterase AT1G53840 69.231 2.92e-118 347
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03161 - - gmx:100777128 444.121