Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03153 ATGGAGAATCGGAAGACATCGGCGTACTACGAGAACAGAGCGGTGCAGTTCGGGGTAGTGAGCACCGAGTGGCTTGCTCAGGCTCAGTCCGCCACTGTCCCTCGTTCCCCTTCTTCTCCTTCCCCATCTCCTCCTCTTCCTCCTTCCCACAATGACGCCGACAAACCCTTCTCCGTCATCCAGGAGTTCGACACCTGGCGCAAGCACCCTGATTTGGCGGAAGCCGTCGCCGCCATTCGTGCCTTGGCCGCCGTCATCCGCTCCAGCAAGGCCACCACCATGATGCAGCTCGAAATCGAACTCAAAAGCGCCTCCGATTCCCTCAAATGTTGGGATACAACCTCAATCTCCTTAACCGCCGCCTGCGATCTCTTCATGCGATACGTCACCAGGACTTCCGCTCTCGAGTACGAAGACTTCAATTCCGCCAAGTCTCGCTTGCTCGAACGCGCCGATAAGTTTGGCGAAATCTCCTTCAAGGCTCGCGAAATCATTGCAATGCTGAGCCAGGATTTTATATTCGACGGTTGCACAATTCTTGTTCACGGTTTCTCCAGAGTCGTGCTTCAGATTCTCAAACTCGCTGCACAGAATAACAAGCTCTTTAGAGTCTTGTGCACAGAGGGGAGACCGGATAGAACGGGTTTGCGGTTTTCCAATGAGCTGGCGAAGCTTGATGTGCCTGTGAAGCTTGTTATAGACTCTGCAGTGGCTTATACTATGGATGAGGTTGACATGGTGTTTGTTGGGGCAGATGGAGTTGTTGAAAGTGGTGGTATAATCAACATGATGGGAACTTACCAAATTGCAATGGTGGCTAAGAGTATGAACAAGCCAGTTTATGTGGCTGCTGAAAGTTACAAGTTTGCTCGATTTTACCCTCTGGATCAAAAGGATTTGGCCCCTGCCTTATGCCCTGTTGATTTTGGTGTGCCTGTTCCATCCAAGGTTGAGGTTGAAAGTTCTGCACGGGATTATACTCCTCCTCAATATCTCACTCTGCTTTTCACTGATTTGGGTGTCCTTACTCCATCAGTTGTTAGTGATGAACTTATCCAGCTATACTTGTAG 1071 0.5023 MENRKTSAYYENRAVQFGVVSTEWLAQAQSATVPRSPSSPSPSPPLPPSHNDADKPFSVIQEFDTWRKHPDLAEAVAAIRALAAVIRSSKATTMMQLEIELKSASDSLKCWDTTSISLTAACDLFMRYVTRTSALEYEDFNSAKSRLLERADKFGEISFKAREIIAMLSQDFIFDGCTILVHGFSRVVLQILKLAAQNNKLFRVLCTEGRPDRTGLRFSNELAKLDVPVKLVIDSAVAYTMDEVDMVFVGADGVVESGGIINMMGTYQIAMVAKSMNKPVYVAAESYKFARFYPLDQKDLAPALCPVDFGVPVPSKVEVESSARDYTPPQYLTLLFTDLGVLTPSVVSDELIQLYL 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03153 356 Gene3D - 55 157 IPR042528 -
Vimu11g03153 356 Gene3D - 160 356 IPR042529 -
Vimu11g03153 356 FunFam Translation initiation factor eIF-2B subunit alpha 160 356 - -
Vimu11g03153 356 FunFam Translation initiation factor eIF-2B subunit alpha 55 157 - -
Vimu11g03153 356 MobiDBLite consensus disorder prediction 37 51 - -
Vimu11g03153 356 Pfam Initiation factor 2 subunit family 70 344 IPR000649 GO:0044237
Vimu11g03153 356 MobiDBLite consensus disorder prediction 29 54 - -
Vimu11g03153 356 PANTHER TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT ALPHA 19 356 - -
Vimu11g03153 356 SUPERFAMILY NagB/RpiA/CoA transferase-like 68 355 IPR037171 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03153 Vimu-Chr11 50921295 50923282 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03153 7 356 Eukaryotic Initiation Factors Gene Family AT1G53880 80.000 0.0 546
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03153 K03239 - gmx:102669842 597.045
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g03153 11 50921295 50923282 Vimu11g03153 11 50921295 50923282 ECH
Vimu10g00038 10 264910 267875 Vimu11g03153 11 50921295 50923282 PCT