Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03150 ATGATGTTTCCGTTCCATCCTCATGGAGTTCCGAAACACGCATGCACTCTTCTCGCTGTAACCTGTGGGGCAAGTTTTGCTGAGCACATGTCCTCACAGAATCAACACAAATATCCTTTCCCCGAGCTAGTTTCAGCAGGGCGTCTTGAGGTTCAAACACTTCGGAATCCGGATAAGGAACAGTTTAGGAAAGTGCTGGAGTCGTATCAACCGAATTTTGTTTATTTGCAAGGAGAGCAGCTAGAGAATGGCAGAGTTGGTTCACTGGTTTGGCAAGGATTGGAATTATCGACTTCTGAAGATATCACAGAGCTCTTTGGTTCCACATTGCCGACGGCTGGATCTGGGTATTATTATTATTATTGTCATTTTTTTATTATTATTACTATTACTATTACTATTATTATTATTATTATTATTATTATTATTATTATTATTGTTTATTTAGAGATACCAAATGGTGAAAGTTTTGCAGAATCTCTTCATCTTAAGGTATCAATACTCAACAAACTACAATTTTTGAAGGATGATAAAAACCAAAAGAACCCATTGCATTTTGATAATTCTATGGTGAAAGGAGTCCCATATATTATATTTTGGAAGACTGCCCTTTCTTCTTATGCTGCTTGCCATTTTCGTCAAGCATTTCTTTCAGTTGTACAGAGTTCGTCTACACATACGTGGGATGCTTTTCATCTTGCACGTGCCTCTTTTGAACTTTACTGTGTCCAAAACAACCAAGTACTTTTGACTGACAGTCATGGTTCTCTTAGTGAGATTGGGCCATACCTTCTTGGTGACTGTCTCAAAATCAATGTTGAGCCTCCAGAGATTGATGAGGAAGATGATGACGAAACTTCCTCAGGCACTCTGCCTGCCATAAAGATACATGAAGATGAAGTGAACTTGAGGTTTCTTATTTGTGGCGCACCTTCAACAGTTGACGAGACCTTGCTGAGATCTTTGGAAAATGGACTCAGAGCTCTCTTAACTATTGAAATCCGAGGTTGCAAGCTCCATGGCAAGTTTAGGTATGTCAATATAACTTGCGCAGCCACTTTTTCTCGGGGAGTTGTGACCATGCGATGTGATATATCAACTTGTAGTTCTGCACATATCTCACTTCTGGTATCTGGCAGTGCACAAACTTGTTTTAATGATCAGCTTTTGGAGAGTCATATAAAAAATGAGATAATTGAGAAGAGTCAACTAGTTCATGCACAACTCAACAATGAGGGAAACAAACAGAATATTTCTGAACCTCGCCGATCTGCTTCTATTGCCTGTGGAGCACCTGTATATGAAATTTGCATGAGGCTTCCTCAATGGGCTTTGCAGATTTTGAGACAGCTAGCACCTGAGGTTTCGTATCGAAGTTTAGTTGCACTCGGTATTGCTAGTATTCAGGGGTTGCCTATAGCTTCTTTCGAGAAAGATGATGCTGAGCGTCTACTTTTCTTTTATCAAAATTGTGAGAAAGATAGTGGTACAAGCAAAAATAATATAATATTTAGCAGTCCTCCTGGTTGGTTGAAACCACCCCCTCCTAGAAGAAACAGGTGTGAACCAAGCCAAGGGGCTAGCCCTGGTGTTCATGACGGTGTCTTTGCAGGGCACGGTGCTGTTTGTAAAGTAAATGAAGAGGAAAAGGATAGAAAAATGGCGAATGGCATTAGCACCCCATTAACTCCTGCTAGACAGAGATTGAAAGTATCTGCAATGAGGCCAATCCCTCACATTCGTCGCCATAGAATGACACCTTTTTGTGGACCTTCCGAGACAGACGGTTTTGATGGTGCCCAAGTTGAGGCTAATTTGCCACTTGTTGCCCCAGCAAAGCGGAGTACTGGGTCAACATCTGCAACACATAGAAAATCATTTTCAATTGCAGCTCAATCTAAGCAGGTTATTTCATTGAACCCATTGCCTCTTAAGAAGCATGGTTGCGGTAGAGGTCCAGTTCAGACATGCTCTGAGGAGGAATTTCTTAAAGATGTCATGGAGTTTCTAATTCTCCGGGGACATAATCGCCTAATTCCTCAAGGAGGGCTTATTGAGTTTCCTGATGCCATACTCAATGGAAAACGTCTTGATCTCTATAATTTGTATAAAGAGGTGGTTACAAGAGGAGGATTTCATGTTGGCAATGGCATCAACTGGAAGGGGCAAATCTTTTCAAAGATGCGGAATTACACAACTACCAATAGGATGACTGGTGTTGGAAATACTCTGAAAAGACATTATGAGACCTACCTTTTAGAATATGAATTAGCGCATGACGATGTGGATGGAGAATGTTGCTTGTTGTGTCACAGTAGTGCAGCTGGTGATTGGGTGAATTGTGGCATATGTGGTGAGTGGGCCCACTTTGGCTGTGACAGAAGGCAGGGTCTAGGCGCATTTAAGGATTATGCAAAAACAGATGGGCTAGAATACATATGTCCTCATTGTAGTGTTACAAATTTCAAGAAGAAACAAAATGTTGGTAATGGATATTCTCAAGGGTCAATGCCTTCACGACTACTTTGA 2529 0.4104 MMFPFHPHGVPKHACTLLAVTCGASFAEHMSSQNQHKYPFPELVSAGRLEVQTLRNPDKEQFRKVLESYQPNFVYLQGEQLENGRVGSLVWQGLELSTSEDITELFGSTLPTAGSGYYYYYCHFFIIITITITIIIIIIIIIIIIIVYLEIPNGESFAESLHLKVSILNKLQFLKDDKNQKNPLHFDNSMVKGVPYIIFWKTALSSYAACHFRQAFLSVVQSSSTHTWDAFHLARASFELYCVQNNQVLLTDSHGSLSEIGPYLLGDCLKINVEPPEIDEEDDDETSSGTLPAIKIHEDEVNLRFLICGAPSTVDETLLRSLENGLRALLTIEIRGCKLHGKFRYVNITCAATFSRGVVTMRCDISTCSSAHISLLVSGSAQTCFNDQLLESHIKNEIIEKSQLVHAQLNNEGNKQNISEPRRSASIACGAPVYEICMRLPQWALQILRQLAPEVSYRSLVALGIASIQGLPIASFEKDDAERLLFFYQNCEKDSGTSKNNIIFSSPPGWLKPPPPRRNRCEPSQGASPGVHDGVFAGHGAVCKVNEEEKDRKMANGISTPLTPARQRLKVSAMRPIPHIRRHRMTPFCGPSETDGFDGAQVEANLPLVAPAKRSTGSTSATHRKSFSIAAQSKQVISLNPLPLKKHGCGRGPVQTCSEEEFLKDVMEFLILRGHNRLIPQGGLIEFPDAILNGKRLDLYNLYKEVVTRGGFHVGNGINWKGQIFSKMRNYTTTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYICPHCSVTNFKKKQNVGNGYSQGSMPSRLL 842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03150 842 Gene3D - 654 759 IPR036431 GO:0003677
Vimu11g03150 842 SMART ARID_2 653 756 - -
Vimu11g03150 842 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 760 823 IPR013083 -
Vimu11g03150 842 ProSiteProfiles ARID domain profile. 656 760 IPR001606 GO:0003677
Vimu11g03150 842 MobiDBLite consensus disorder prediction 503 527 - -
Vimu11g03150 842 Pfam ARID/BRIGHT DNA binding domain 659 756 IPR001606 GO:0003677
Vimu11g03150 842 CDD ARID 658 756 - -
Vimu11g03150 842 CDD PHD_ARID4_like 766 817 - -
Vimu11g03150 842 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 8 164 IPR042293 -
Vimu11g03150 842 SUPERFAMILY FYVE/PHD zinc finger 752 820 IPR011011 -
Vimu11g03150 842 SUPERFAMILY ARID-like 656 771 IPR036431 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03150 Vimu-Chr11 50898484 50907158 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03150 5 831 ARID Transcription Factor Family AT3G43240 54.251 0.0 872
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Vimu11g03150 ARID 3.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03150 - - gmx:100816540 1371.3