Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03148 ATGGCTCCTTCTTCTACACTAAACAATGGAAGAACATCAAATCAAAGAAAGAGAAAGATTGAGATCAAAGAAGTTGAACAGAGAAATCGGCGATGCGTGACGTTTTCGAAACGCAAATTAGGACTTTTTAACAAAGTTACTGAACTTTCTCTTCTATGCAAAGCACAAACTGCTTTGATCATCACCTCTGAAAATGGCAACGTCTATTCTTCTGGTTACCCTAATACCGAAGCCGTTCTCTATCGCTACGTCAGCGGAGGGTTTTCCGAACTCTGCAGAGTTACAGAGGACCAGCAAGAATATATAGAAAAGCAAAGGCTTGAATATGAGAATGTGCACATAAACTTGAAAGAAAAGCAGAAGCAATTGGAAGAATTGAAGGAAGCACAGAAGAGTCGTTCTTGTTTTGATTCTTGGTGGAATCTCTCACATCAGAACATGTCTTTGGAAGATCTTGAAGACTTCAAGACCTCTTTGGAAACTTTCAAGCTTAACATCATCACACTATTACAAGAGAAAGAAGCAAGTTTTCCACTGAGCATGTTGAAGAGTGTGGATTATAGTTTTTAA 570 0.386 MAPSSTLNNGRTSNQRKRKIEIKEVEQRNRRCVTFSKRKLGLFNKVTELSLLCKAQTALIITSENGNVYSSGYPNTEAVLYRYVSGGFSELCRVTEDQQEYIEKQRLEYENVHINLKEKQKQLEELKEAQKSRSCFDSWWNLSHQNMSLEDLEDFKTSLETFKLNIITLLQEKEASFPLSMLKSVDYSF 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03148 189 PRINTS MADS domain signature 17 37 IPR002100 GO:0003677|GO:0046983
Vimu11g03148 189 PRINTS MADS domain signature 37 52 IPR002100 GO:0003677|GO:0046983
Vimu11g03148 189 PRINTS MADS domain signature 52 73 IPR002100 GO:0003677|GO:0046983
Vimu11g03148 189 SMART madsneu2 15 74 IPR002100 GO:0003677|GO:0046983
Vimu11g03148 189 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 25 70 IPR002100 GO:0003677|GO:0046983
Vimu11g03148 189 Coils Coil 102 133 - -
Vimu11g03148 189 ProSiteProfiles MADS-box domain profile. 15 75 IPR002100 GO:0003677|GO:0046983
Vimu11g03148 189 SUPERFAMILY SRF-like 16 87 IPR036879 GO:0003677|GO:0046983
Vimu11g03148 189 PANTHER MADS BOX PROTEIN 17 166 - -
Vimu11g03148 189 Gene3D - 27 134 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03148 Vimu-Chr11 50877190 50877759 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03148 17 168 Type I MADS-box Gene Family AT2G24840 31.210 1.80e-19 81.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vimu11g03148 SRF-TF 6.9e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03148 - - gsj:114418701 183.341