Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03147 ATGGAGGGAACTTCATACGCATCTTCATCTGCGAATGTTTCCTCCACTGCTGAAGATCCTTTGGTTGACGATTTCTACTTTTCAGCACTTCACGATGCTGAAGAAATATTTCCAATTTCGGATGAGAAATATGCCGAAGAGTTACAACTACAGGAAGCCCTCTATTCCTCCGCAATGTCAACTGCTAGGGCTGAAAAAGAAGTTGTTATAGTGGACGTAGATGATGACGACGACCACCATTTGAGAAAGCTCAAGGGGAAACAGAAAGATATCGGTGAATCTTCCCATGGCAAATACTGTGGTATTTGCATGGATGCCAAACCTGGAGAAGAAATGTTCAGGAACCAAAACTGTTCTCACCTTTATTGCGTAGATTGCATTGGAGGACATGTTGCTGCAAAGATTCAGGAAAACATATCAATGGTGAGATGTCCTGAGCCAAAATGCAAAGAGGTTATAGAGCCTGAGAACTGTCGTTCGATTATCCCTAAAGAAGTGTTTGATAGATGGGAAGATGCTCTTTGTGAGAATGTAGTGCTCGAATCACAAAAGTTTTACTGTCCTTTCAAGGATTGCTCAGCCATGATGATATGTGATGAAGGGGAAGTAGTAACTATTTCTGAGTGTCCACATTGTAACAGACTGTTTTGTGCACAGTGTAAGGTTTCATGGCATGCAGGATTAGATTGCAGTGAGTTCAACGCCTTGAAGCATGATGAGAGAGGGAGGGAAGATCTGCTGGTGCTGGATCTTGCTAAGAACAAAAGCTGGAGAAGATGTCCAAAATGCAGATTCTATGTGGAAAAAAATGAAGGATGTTCTCATATTTCTTGCAGACTTTTCGGTGGTGACGAAATATTTCCAATTTCGGATGATAAATATGCGAATGACGGTGACCACCATTTGAGAACCCTCAAGGGGAAACAAAAAGAGATAGGTGAATCTTCCCATGACTACTGTGATAATTGCATGGATCACAAACTTAGAGAAGAAATGTTCAAAAACCAAAACTCTTCTAACCTTTTTTGTGTAGATTGCATTGGAGGACATGTTGCTGCAAAGAACAATTATAAATATGCTGAAAAGCGATTACAAGAAGTCCTCTATTCCTCCACAACGTCAAGTGTCAGGGATGAAAAAGAAGTTGTTAGAGTGAACGTAGATGATGACGGTGACCACCATTTGAGAACCTTCAAGGGGAAACAGGAAGAGATCGGTGAATCTTCGTATGGCTACTGTGGTATTTGCATGGATGCCAAATCTAGAGAAGAAATGTTCAGGAACCAAAACTGTTCTCACCTTTATTGTGTAGATTGCATTGGAGGACATGTTGCTGCAAAGATTCAGGAAAATATATCAAAGGTGAAATAG 1371 0.4085 MEGTSYASSSANVSSTAEDPLVDDFYFSALHDAEEIFPISDEKYAEELQLQEALYSSAMSTARAEKEVVIVDVDDDDDHHLRKLKGKQKDIGESSHGKYCGICMDAKPGEEMFRNQNCSHLYCVDCIGGHVAAKIQENISMVRCPEPKCKEVIEPENCRSIIPKEVFDRWEDALCENVVLESQKFYCPFKDCSAMMICDEGEVVTISECPHCNRLFCAQCKVSWHAGLDCSEFNALKHDERGREDLLVLDLAKNKSWRRCPKCRFYVEKNEGCSHISCRLFGGDEIFPISDDKYANDGDHHLRTLKGKQKEIGESSHDYCDNCMDHKLREEMFKNQNSSNLFCVDCIGGHVAAKNNYKYAEKRLQEVLYSSTTSSVRDEKEVVRVNVDDDGDHHLRTFKGKQEEIGESSYGYCGICMDAKSREEMFRNQNCSHLYCVDCIGGHVAAKIQENISKVK 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03147 456 SUPERFAMILY RING/U-box 98 177 - -
Vimu11g03147 456 SMART ibrneu5 168 230 IPR002867 GO:0008270
Vimu11g03147 456 ProSiteProfiles Zinc finger RING-type profile. 100 148 IPR001841 -
Vimu11g03147 456 ProSiteProfiles TRIAD supradomain profile. 96 313 IPR044066 -
Vimu11g03147 456 SMART ring_2 196 263 IPR001841 -
Vimu11g03147 456 SMART ring_2 413 456 IPR001841 -
Vimu11g03147 456 SMART ring_2 100 149 IPR001841 -
Vimu11g03147 456 SUPERFAMILY RING/U-box 241 278 - -
Vimu11g03147 456 Pfam IBR domain, a half RING-finger domain 169 230 IPR002867 GO:0008270
Vimu11g03147 456 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 388 449 IPR031127 GO:0004842|GO:0016567
Vimu11g03147 456 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 406 456 IPR013083 -
Vimu11g03147 456 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 94 182 IPR013083 -
Vimu11g03147 456 Gene3D - 228 404 - -
Vimu11g03147 456 FunFam RBR-type E3 ubiquitin transferase 95 181 - -
Vimu11g03147 456 SUPERFAMILY RING/U-box 173 234 - -
Vimu11g03147 456 SUPERFAMILY RING/U-box 408 453 - -
Vimu11g03147 456 ProSitePatterns Zinc finger RING-type signature. 431 440 IPR017907 -
Vimu11g03147 456 ProSitePatterns Zinc finger RING-type signature. 118 127 IPR017907 -
Vimu11g03147 456 CDD BRcat_RBR_unk 181 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03147 Vimu-Chr11 50851272 50857820 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03147 77 319 C3H Transcription Factor Family AT2G31760 27.273 2.44e-17 82.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03147 K11975 - gmx:100816161 398.667