Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03146 ATGTCAAGTGGCAGGGTTGAAAAGAAAGCTATTCAAGCGGATGTAAAGAATGTCGGTTCCTTATCTTTGAGAAATCTCAAGTTGAAACATAAAGAGATGTCAAGTCGTAGAGTTGAAAAGAAAGTTGTTCGAGTGGATGTAAAGAATGTCGGTTCCTTATCTTTGACAAACCCCAAGTTGAAACGTAAAGAGATGTCAAGTAATTTGTTGAAACATAAAGAGATGTCAACTAGTACGGTTGAAAAGAAAGCTGTTCAAGTGAATGTAAAGGATGTGGGTGACTTATCTTTGAGAAACCCCAAGTTGAAACATAAAGAGATGTCAAGTGACAGGGTTAAAAAGAAAACTGTTCGAGTGGATGTAAAGAATGTCGGTTCCTTATCTTTGACAAACCCCAAGTTGAAACGGAAAGAGATGTCAAGTAATTCGGTTGAAAAGAAAGTTGTTCAAGTGAATGTAAAGGATTTGGGTGACTTATCTTTGAGAAACCTCAAGAGGAAAAATAAAGAGATCGGTGAAACTTCCCTTGCACACTGTGGTATTTGCATGGATGCTAAGCCTGGGAAAGAAATGTTCAAGAACCAAAATTGTTCTCACCTTTATTGTGATTATTGCATTGGACGACATGTTGCTGCAAAGATTCAGGAAAATATATTAATGGTGAAATGTCCTGAGCCAAAATGCAAAGCGGTTATAGAGCCTAACAACTGTCGTTCAATTATCCCTAAAGAAGTTTTTGATAGATGGGGAAATGCTCTTTGTGAGAATGCGGTGCTTGGATCACAAAAGTTTTACTGTCCCTTTAAGGATTGTTCAGCTATGATGATATGTGATGAAGGGGAAGTTGTGACTTCATCGGAGTGTCCACATTGCCATAGACTGTTTTGTGCACAGTGCAAGGTTTCGTGGCATGCAGGAATAGACTGTGAGGAGTTTCAGAGGTCGAAAAGAAAGAAAGGAGAGAACGGAGGCTCATTGGTGATTGAACTTGCAAAGACTAAACATGTGGCCATGAATTTTGCTATGCTTGTGGATTGTCTTGGACTCCTAAACATTATTCGTGTGTAG 1068 0.3895 MSSGRVEKKAIQADVKNVGSLSLRNLKLKHKEMSSRRVEKKVVRVDVKNVGSLSLTNPKLKRKEMSSNLLKHKEMSTSTVEKKAVQVNVKDVGDLSLRNPKLKHKEMSSDRVKKKTVRVDVKNVGSLSLTNPKLKRKEMSSNSVEKKVVQVNVKDLGDLSLRNLKRKNKEIGETSLAHCGICMDAKPGKEMFKNQNCSHLYCDYCIGRHVAAKIQENILMVKCPEPKCKAVIEPNNCRSIIPKEVFDRWGNALCENAVLGSQKFYCPFKDCSAMMICDEGEVVTSSECPHCHRLFCAQCKVSWHAGIDCEEFQRSKRKKGENGGSLVIELAKTKHVAMNFAMLVDCLGLLNIIRV 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03146 355 ProSiteProfiles Zinc finger RING-type profile. 179 227 IPR001841 -
Vimu11g03146 355 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 173 262 IPR013083 -
Vimu11g03146 355 CDD BRcat_RBR_unk 260 312 - -
Vimu11g03146 355 SUPERFAMILY RING/U-box 174 256 - -
Vimu11g03146 355 FunFam RBR-type E3 ubiquitin transferase 174 260 - -
Vimu11g03146 355 ProSiteProfiles TRIAD supradomain profile. 175 355 IPR044066 -
Vimu11g03146 355 SMART ibrneu5 247 309 IPR002867 GO:0008270
Vimu11g03146 355 SUPERFAMILY RING/U-box 259 315 - -
Vimu11g03146 355 Pfam IBR domain, a half RING-finger domain 261 309 IPR002867 GO:0008270
Vimu11g03146 355 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 90 319 IPR031127 GO:0004842|GO:0016567
Vimu11g03146 355 ProSitePatterns Zinc finger RING-type signature. 197 206 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03146 Vimu-Chr11 50838181 50839763 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03146 178 334 ARIADNE family AT2G31780 29.193 1.02e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03146 K11975 - var:108323675 498.434