Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03143 ATGGACGGAGCTACATCCTCATCTTCATTTGTGAAGTTTCCCTCCACTGCTGAAGATCGTCACTTGGTCGACGATTTCTGCTTTTCAGCACTTTACGATGATGAAGAAATATTTCCAATTTCTGATGATAAATATGCTGAAGAGCTGCAACTACAAGAAGCACTCTATTCCTCCACCATGTTAAGTGCTACGGTTAAAAAGAAAGCTGTTCAAGTGGCTGTAAATGATGTCGGTGACGTATCTTTGAGAAACCTCAAGAGGAAACATAAAGAGATCGATGAAACTTCCCTTGCACACTGTGGTATTTGCATGGATGCCAAGCCTGGGAAAGAAATGTTCAATAATCAAAATTGTTCTCACCTTTATTGTGATTATTGCATTGGAAGACATGTTTCTGCAAAGATTCAGGAAAATATATCAATGGTGAAATGTCCTGAGCCAAAATGCAAAGCTGTTATTGAGCCTAACAACTGTCGTTCAATTATCCCTAAAGAAGTGTTTGATAGATGGGAAAATGCTCTTTGTGAGAATGTGGTGCTTGGATCACAAAAGTTTTACTGTCCCTTTAAGGATTGTTCAGCTATGATGATATGTGAAGCAGGGGAAGTTGTGACTTCATCGGAGTGTCCACATTGCAATAGACTGTTTTGTGCACAGTGCAAGGTTTCGTGGCATGCAGGAAAAGATTGTGAGAAGTTTCAGAGATGTGGCCATGAATTTTGCTATGCTTGTGGATTGTCTTGGACTGGTAGACATTATTCGTGTTTAGGTCGTTAA 777 0.399 MDGATSSSSFVKFPSTAEDRHLVDDFCFSALYDDEEIFPISDDKYAEELQLQEALYSSTMLSATVKKKAVQVAVNDVGDVSLRNLKRKHKEIDETSLAHCGICMDAKPGKEMFNNQNCSHLYCDYCIGRHVSAKIQENISMVKCPEPKCKAVIEPNNCRSIIPKEVFDRWENALCENVVLGSQKFYCPFKDCSAMMICEAGEVVTSSECPHCNRLFCAQCKVSWHAGKDCEKFQRCGHEFCYACGLSWTGRHYSCLGR 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03143 258 SUPERFAMILY RING/U-box 95 177 - -
Vimu11g03143 258 FunFam RBR-type E3 ubiquitin transferase 95 181 - -
Vimu11g03143 258 ProSiteProfiles Zinc finger RING-type profile. 100 148 IPR001841 -
Vimu11g03143 258 SMART ibrneu5 168 230 IPR002867 GO:0008270
Vimu11g03143 258 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 94 181 IPR013083 -
Vimu11g03143 258 ProSiteProfiles TRIAD supradomain profile. 96 258 IPR044066 -
Vimu11g03143 258 ProSitePatterns Zinc finger RING-type signature. 118 127 IPR017907 -
Vimu11g03143 258 Pfam IBR domain, a half RING-finger domain 169 230 IPR002867 GO:0008270
Vimu11g03143 258 SUPERFAMILY RING/U-box 177 234 - -
Vimu11g03143 258 CDD BRcat_RBR_unk 181 233 - -
Vimu11g03143 258 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 76 248 IPR031127 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03143 Vimu-Chr11 50829622 50830879 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03143 99 255 C3H Transcription Factor Family AT2G31760 25.123 1.66e-10 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03143 K11975 - gmx:100816161 337.806