Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03139 ATGGACGAAACTTCATCTGACTCTTTTCAGTCTTCACAGGAGTCTTTTTCCTCTTCATCGCAGTCTTCACACGAGTATACTTCCTCTTCATCTCAGTTTTCACACGAGTATGCTTCCTCTTCATCTCAGTCTTCACACGAGTATGCTTCCTCTTCATCTCAGTCTTCATACGATTATGCTTCCTCTTCATCAGATGGTTTGGAATTTGAACCAAAGAATGAATTTCCAACATCTGATAGAAAAAATGCTAAGCGGAAATTGTCGAGTTCCTCATCGGAAATCGACGGAGGAGGGTCAAGTAGAAGACTCAGCAAAGTGGATGCAGACGGCGACGATGACGGCCCTGTGAGATACCGCCCTTTGACAAACCGCAAGGGGAAACAGGTAAAGATAGAAGAATCTTTGTATGTGTGTGGTATTTGCATGGATGCCATACCTGATGAGAAGAAGTTCAGGATCCACAACTGTTCTCACATCTTTTGCAATGGCTGCATCACAAGACATGTTGCTGCAAAGATTAAGGAGAATAAATCAGTGGTGCAATGCCCAAACCCTAATTGCAAGGAGGGTATAGAGCTTGAGCATTGTCGTTCGATTATCCCTAAAGAAGTGTTTGATAAATGGGGAGATATTCTTTGTGAGAATGTAGTGGTTGAAGCAGAAAAGTTTTTCTGTCCGTTTAAGGATTGTTCAGCTATGTTGATGCGTGATGGTGAAGAAGTTGTGACTCCATCAGAGTGCCCACAGTGCAACAGACTGTTCTGTGCACAGTGCAAGGTTTCGTGGCATGCAGGAATAGACTGTGAGGAGTTTCAGAGGTCGAAAAGAAAGAAAGGAGAGAATGGAGACTCGACGGTGACGAAGCTTGCAAAGAAGAAAGGTTGGAGAAAATGTCCAAATTGCAGTTTTTATGTAGAAAGAATTGCAGGATGCTCACTTATAACTTGCAGGTTTGTTATCTATATATTTCTAACTAGTAATTTATTATTATTTTTTTATTCATTATAA 1008 0.4127 MDETSSDSFQSSQESFSSSSQSSHEYTSSSSQFSHEYASSSSQSSHEYASSSSQSSYDYASSSSDGLEFEPKNEFPTSDRKNAKRKLSSSSSEIDGGGSSRRLSKVDADGDDDGPVRYRPLTNRKGKQVKIEESLYVCGICMDAIPDEKKFRIHNCSHIFCNGCITRHVAAKIKENKSVVQCPNPNCKEGIELEHCRSIIPKEVFDKWGDILCENVVVEAEKFFCPFKDCSAMLMRDGEEVVTPSECPQCNRLFCAQCKVSWHAGIDCEEFQRSKRKKGENGDSTVTKLAKKKGWRKCPNCSFYVERIAGCSLITCRFVIYIFLTSNLLLFFYSL 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03139 335 SUPERFAMILY RING/U-box 210 274 - -
Vimu11g03139 335 ProSiteProfiles TRIAD supradomain profile. 134 335 IPR044066 -
Vimu11g03139 335 SUPERFAMILY RING/U-box 133 215 - -
Vimu11g03139 335 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 132 219 IPR013083 -
Vimu11g03139 335 ProSitePatterns Zinc finger RING-type signature. 156 165 IPR017907 -
Vimu11g03139 335 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 28 319 IPR031127 GO:0004842|GO:0016567
Vimu11g03139 335 SUPERFAMILY RING/U-box 285 316 - -
Vimu11g03139 335 Gene3D - 265 318 - -
Vimu11g03139 335 CDD BRcat_RBR_unk 219 271 - -
Vimu11g03139 335 FunFam RBR-type E3 ubiquitin transferase 133 219 - -
Vimu11g03139 335 MobiDBLite consensus disorder prediction 1 68 - -
Vimu11g03139 335 MobiDBLite consensus disorder prediction 72 88 - -
Vimu11g03139 335 MobiDBLite consensus disorder prediction 100 121 - -
Vimu11g03139 335 Pfam IBR domain, a half RING-finger domain 220 268 IPR002867 GO:0008270
Vimu11g03139 335 ProSiteProfiles Zinc finger RING-type profile. 138 183 IPR001841 -
Vimu11g03139 335 MobiDBLite consensus disorder prediction 1 121 - -
Vimu11g03139 335 SMART ibrneu5 206 268 IPR002867 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03139 Vimu-Chr11 50790689 50791696 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03139 138 317 C3H Transcription Factor Family AT2G19610 25.263 3.63e-17 80.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03139 K11975 - gmx:100815626 271.937