Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03135 ATGTGTGGAGGTGCGATTATCTCCGACTTCATTCCGGCGGGGCCCGCCGGCCGGTCCCGACGCGTGACCCCCGACATCCTGTGGCCGAATTTGAAGAAGCGGTTCTTGAAGCCGCTGCTGGACGATGATTTCGAGGCGGGGTTCAGGGAATTCAAGGATGACTCTGAAATCGAGGATGATGATGATGAGGATGAAGAGGACAGTTTGATGGTGGTTGGATCAACAACAGCTGTAAAATCTGGGGAATCAAAAGGGCAAGCTGAGAAGTGTGCCAAGAGAAAGAGGAAGAACCAATATAGAGGAATTCGTCAGCGTCCATGGGGAAAGTGGGCTGCTGAGATCCGTGACCCAAGAAAGGGGGTTCGTGTTTGGCTTGGAACTTTCAGCACTGCTGAAGAAGCTGCAAGAGCTTATGATGCTGAGGCAAGGAGGATCCGTGGCAAGAAAGCCAAGGTGAATTTCCCTGATGAGCCTTCAGCTGTTTCTTCTAAACGCCTCAAGGTGATTCCAGAGGAAAGCCTGAGCTCTGTGAAGCCGAAAATGAACCACTTGTTCAATTTTGGTGACAATCTGGAGGACTACTACAGCCCTGTGGATCAGGTGGAACAGAAGCCATTGGTTAACCAGTATGTGAACCCTGGTCCATTCACTGGAAACTGTGTTCAGCTCTCACCAGTTTCTCAATCTGCTGATGTTACTGCTTATTTCAGTTCTGAGCATTCGAGCAATTCATTTGATTACTCTGACCTTGGATGGGGTGAACAAGTTCCAAGAACCCCTGAAATCTCCTCCATTCTTTCTGCTCCTCTGGAGGGTGAATCTCAGTTTGTGCAGGATCAGATTCAGAAGAAAGACAGTGAAGACATGATGCCTGTGCAAGATGATTCTGCAAAGACACTTTCTGAGGAGCTTGCAGACATCGAATCCCAGCTGAAGTTCTTCGAGGCCCCTTTGTTTGATGGAAGCTGGGGTGATGCTTCATTGGCTTCTCTGCTAGGCAGTGATGCAACTCAGGATGCTGGAAACCCTTTGAACCTTTGGAGCTTCGACGACCTGCCATCAATGGCAGGCGTTTTCTGA 1080 0.4944 MCGGAIISDFIPAGPAGRSRRVTPDILWPNLKKRFLKPLLDDDFEAGFREFKDDSEIEDDDDEDEEDSLMVVGSTTAVKSGESKGQAEKCAKRKRKNQYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFSTAEEAARAYDAEARRIRGKKAKVNFPDEPSAVSSKRLKVIPEESLSSVKPKMNHLFNFGDNLEDYYSPVDQVEQKPLVNQYVNPGPFTGNCVQLSPVSQSADVTAYFSSEHSSNSFDYSDLGWGEQVPRTPEISSILSAPLEGESQFVQDQIQKKDSEDMMPVQDDSAKTLSEELADIESQLKFFEAPLFDGSWGDASLASLLGSDATQDAGNPLNLWSFDDLPSMAGVF 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03135 359 Gene3D AP2/ERF domain 97 156 IPR036955 GO:0003700|GO:0006355
Vimu11g03135 359 CDD AP2 98 156 IPR001471 GO:0003700|GO:0006355
Vimu11g03135 359 ProSiteProfiles AP2/ERF domain profile. 98 155 IPR001471 GO:0003700|GO:0006355
Vimu11g03135 359 SUPERFAMILY DNA-binding domain 98 156 IPR016177 GO:0003677
Vimu11g03135 359 MobiDBLite consensus disorder prediction 77 101 - -
Vimu11g03135 359 FunFam Ethylene-responsive transcription factor 2 97 156 - -
Vimu11g03135 359 PRINTS Ethylene responsive element binding protein signature 99 110 IPR001471 GO:0003700|GO:0006355
Vimu11g03135 359 PRINTS Ethylene responsive element binding protein signature 121 137 IPR001471 GO:0003700|GO:0006355
Vimu11g03135 359 SMART rav1_2 98 161 IPR001471 GO:0003700|GO:0006355
Vimu11g03135 359 PANTHER DNA-BINDING DOMAIN 68 270 IPR044808 GO:0003700|GO:0009873
Vimu11g03135 359 Pfam AP2 domain 98 147 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03135 Vimu-Chr11 50744041 50746352 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03135 1 355 AP2-EREBP Transcription Factor Family AT3G14230 41.500 8.45e-59 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vimu11g03135 AP2 4.2e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03135 K09286 - gmx:100818646 538.495
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g03135 11 50744041 50746352 Vimu11g03135 11 50744041 50746352 ECH
Vimu10g00035 10 257259 259054 Vimu11g03135 11 50744041 50746352 PCT