Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03127 ACATGGGAAAAGCTTCAACTTGCTGCTAGGGTTATCGTTGCAATTGAGAACCCTCAGGATATTATTGTGCAATCTGCTAGGCCTTATGGTCAGAGAGCTGTTCTCAAGTTTGCTCAGTACACTGGTGCTCATGCCATTGCTGGAAGGCACACTCCTGGTACCTTTACCAATCAGCTCCAAACCTCTTTTAGCGAGCCTCGCCTCCTTATCCTCACGGATCCAAGAACAGATCATCAGCCCATTAAGGAAGCTGCTCTTGGAAACATTCCAACCATTGCTTTCTGTGACACTGACTCGCCCATGAGGTATGTGGACATTGGGATTCCTGCCAACAACAAGGGCAAACACAGCATTGGGTGTCTATTTTGGCTTCTTGCCAGGATGGTGTTGCAAATGAGGGGTACCATTCGTCCCGGTCTCAAATGGGATGTTATGGTGGACTTGTTCTTCTATAGAGAACCAGAGGAGGCTAAGCAACAAGAGGAGGAGGAAGCTCCTGCTGGTGATTATGCCATCACAGACTATAATCCTGGTGCTATTGCTGGTGATGGCCAGTGGCCCGGTACAATTGATCAATCGTGGACAGATGCAGTTCCACAACCTATTCCAGCTGTACCTGGCGTCAACTGGGGAGCGCCAGCCTCTACAGATGCACCCGCTGCAGGAGATTGGGGCGAGGCTGTTCCACCGCCACAACAAATCCCTCTTCCTTCTTCCGGAGTTGAATCTGTCCAAGCAAGTGGCTGGGATTAA 753 0.5007 TWEKLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGLKWDVMVDLFFYREPEEAKQQEEEEAPAGDYAITDYNPGAIAGDGQWPGTIDQSWTDAVPQPIPAVPGVNWGAPASTDAPAAGDWGEAVPPPQQIPLPSSGVESVQASGWD 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03127 250 MobiDBLite consensus disorder prediction 156 250 - -
Vimu11g03127 250 FunFam 40S ribosomal protein SA 1 167 - -
Vimu11g03127 250 SUPERFAMILY Ribosomal protein S2 1 147 IPR023591 -
Vimu11g03127 250 PRINTS Ribosomal protein S2 signature 83 94 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vimu11g03127 250 PRINTS Ribosomal protein S2 signature 66 83 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vimu11g03127 250 PRINTS Ribosomal protein S2 signature 104 118 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vimu11g03127 250 PRINTS Ribosomal protein S2 signature 41 58 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vimu11g03127 250 NCBIfam 30S ribosomal protein S2 1 153 IPR005707 GO:0003735|GO:0006412|GO:0015935
Vimu11g03127 250 CDD RPS2 1 131 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vimu11g03127 250 PANTHER 40S RIBOSOMAL PROTEIN SA 1 234 IPR005707 GO:0003735|GO:0006412|GO:0015935
Vimu11g03127 250 ProSitePatterns Ribosomal protein S2 signature 2. 66 90 IPR018130 GO:0003735|GO:0005840|GO:0006412
Vimu11g03127 250 Gene3D - 1 167 - -
Vimu11g03127 250 Pfam Ribosomal protein S2 64 129 IPR001865 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03127 Vimu-Chr11 50678531 50680054 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03127 1 222 Cytoplasmic Ribosomal Protein Gene Family AT3G04770 75.000 1.12e-115 331
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03127 K02998 - gmx:548014 481.485
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g03127 11 50678531 50680054 Vimu11g03127 11 50678531 50680054 ECH