Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03117 ATGTTATGGTTGTACGGAGTTCGTGTGTCAGTTCAATTCGTCGACAAGAAACCTTGGAAGTTTGGTTTGTTGGTGGTGGTGGGAATAGCAATGGCTAATGAAGGAAACAAAAGCAATGACTTCTATACGATCTTGGGGTTGGACAAGGAGTGCACTGAATTGGAGTTAAAGAATGCATATAAGAAACTTGCAAAGAAATGGCACCCGGATCGTTGTTCTGCATCTGGGAATTCAGAGTTAGTGGAACAAGCTAAGAAGAAATTCCAGGAAATTGGGGAAGCCTATTCTGTTTTATCTGACGCCAACAAAAGGCTAATGTACGACGTTGGTGTCTACGATAGTGATGACGACGAAAACGGCATGGGGGACTTTTTGGACGAAATGTTAACAATGATGAGTCAGACCAAATCAAATGAAAATGGAGAGGAGAGCTTTGAGGAGTTGCAACAGTTGTTTGAAGACATGTTTCAAGCAGACATTGGATTGGATGGAAGCCCCTCTCTTTCTTCTGCAGATTGCTCTAATTCATCTGCTTACATGACTTACAGTGAAAGTTCTAGTTCAAATAAACGCAATTCCACTGAGATGAAATTTGGGAAGGCAGAGGATTCCTCTGTCTTTGATACAAGTTACCAGAATTTCTGTTTTGGGGTGAACCTACTCCAAGATATAGAGGAAGAAAAGGAGAGAATTCCAGAAGGAGGAGGTAGGAAAAGATGTAGAAATGGCAGAAAGCAAAAAATGTCCTATGAACATGATGTTTTAATCTGA 771 0.4086 MLWLYGVRVSVQFVDKKPWKFGLLVVVGIAMANEGNKSNDFYTILGLDKECTELELKNAYKKLAKKWHPDRCSASGNSELVEQAKKKFQEIGEAYSVLSDANKRLMYDVGVYDSDDDENGMGDFLDEMLTMMSQTKSNENGEESFEELQQLFEDMFQADIGLDGSPSLSSADCSNSSAYMTYSESSSSNKRNSTEMKFGKAEDSSVFDTSYQNFCFGVNLLQDIEEEKERIPEGGGRKRCRNGRKQKMSYEHDVLI 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03117 256 PANTHER PUTATIVE, EXPRESSED-RELATED 32 211 - -
Vimu11g03117 256 ProSitePatterns Nt-dnaJ domain signature. 88 107 IPR018253 -
Vimu11g03117 256 MobiDBLite consensus disorder prediction 229 256 - -
Vimu11g03117 256 CDD DnaJ 40 100 IPR001623 -
Vimu11g03117 256 Gene3D DnaJ domain 37 164 IPR036869 -
Vimu11g03117 256 Pfam DnaJ domain 40 108 IPR001623 -
Vimu11g03117 256 ProSiteProfiles dnaJ domain profile. 40 111 IPR001623 -
Vimu11g03117 256 SUPERFAMILY Chaperone J-domain 37 123 IPR036869 -
Vimu11g03117 256 PRINTS DnaJ domain signature 42 60 IPR001623 -
Vimu11g03117 256 PRINTS DnaJ domain signature 60 75 IPR001623 -
Vimu11g03117 256 PRINTS DnaJ domain signature 103 122 IPR001623 -
Vimu11g03117 256 PRINTS DnaJ domain signature 83 103 IPR001623 -
Vimu11g03117 256 SMART dnaj_3 39 103 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03117 Vimu-Chr11 50627382 50630373 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03117 41 108 C2H2 Transcription Factor Family AT1G74250 42.029 3.54e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03117 - - gmx:100791192 358.221