Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03114 ATGGGTTCCAAAGTCACAGAGAATGTGGGACAAATTGTAATATTCAATTCATTTTTGACAAGACCTGGCATGAAGCAGAAGCAGCAGCAGCAGCTTAACCTAATGTACAATCCCTGTGAGATTCTGGTGTTGGAAAATAATTGTGTTTATCGTCAAACTCGTGAAGCAGTGACACCAGACAATAACAGAGAAGGTCCACCAACTCAGCCGGTGACGGAGTTTTCCGCACGTCCAATTCAATTCTGCCACGTCACCAACTCTTCCTCTGCTCTCTACCACGTGTCGACGATCGGCGGCGAGAAGGATATGGACGATGAGGAAGAGATCCAGTCGCATCCGTCGCCGGCCAGCGGATCCCCGGTCTCTTCTCCGAGGGCGAACGGACGGATAACGGTCACTGTCGCGGCGCCGGCGCCGTCGAATAGTTTGGCATTAGCGCTTCCGATTCAGCAGCCGTCGAAGGGGAACGGTGGTGGAGGAGGCGGCGGAGGAAGGGAGGATTGCTGGAGCGAAGGCGCGACGGCGGTACTGATCGACGCGTGGGGAGAGAGGTATCTGGAACTGAGCAGAGGAAATCTGAAACAGAAGCACTGGAAGGAGGTGGCGGACATCGTGAGCGGCAGAGAGGATTACACGAAGGCGCCGAAGACAGATATTCAGTGCAAAAACCGGATCGACACCGTAAAGAAGAAGTACAAATCGGAGAAGGCTAAGATCGCCGCCGGAGCCACCAGCAAGTGGCCGTTCTTCGACCGTTTGGACAAATTAATCGGCCCAAGCGCCAAGATCCCCGGCGCCGGAAGCTCCTCCGGTGCCGCCGGCACCAGCGCTGCCGGAAACAGTATTTTACAGTCGCACAAAGTGCCGTTAGGGATTCCGGTCGGCGTTCGCGACGGCGTGAATCAGTATCACCGTCCTCAAAGGCCCGCGCAGCAGCAACAACCGCAGCCGGTTCCGTTGAAGAACCAGAAGATTCAGTTCCGGCGCCGCGGTCCACCGTTGGAATCAGATTCGGACGAGCGTGGGGCGTCATCGCCAGCTTCGAGCGACAGTTTTCCCCCGGAGAGTTTCGAGCGGAAGAGGCCGCGGGTGATGAGTTCGAACGCAGGGAAAGGAAGCGAAGGAAGACGGAGGGCGAAGGGTTGGGGAAGCGCGGTGAGGGAACTGACGCAGGCGATTCTGAAATTTGGCGAGGCGTATGAACACGCGGAGAGCTCGAAGCTGCAGCAGGTGGTGGAGATGGAGAAGCAGAGGATGAAGTTCGCGAAGGATTTGGAGTTGCAGAGGATGCAGTTTTTCATGAAGACACAACTGGAGATTTCGCAACTGAAGCTCGGAAGAAAAGGTGCTAATCCTGGCAACAATCACCATAGCACCACGAACAATAACAATAACAACAATCATAACAAAATTAATAGCGACAGCGAGTGA 1431 0.5493 MGSKVTENVGQIVIFNSFLTRPGMKQKQQQQLNLMYNPCEILVLENNCVYRQTREAVTPDNNREGPPTQPVTEFSARPIQFCHVTNSSSALYHVSTIGGEKDMDDEEEIQSHPSPASGSPVSSPRANGRITVTVAAPAPSNSLALALPIQQPSKGNGGGGGGGGREDCWSEGATAVLIDAWGERYLELSRGNLKQKHWKEVADIVSGREDYTKAPKTDIQCKNRIDTVKKKYKSEKAKIAAGATSKWPFFDRLDKLIGPSAKIPGAGSSSGAAGTSAAGNSILQSHKVPLGIPVGVRDGVNQYHRPQRPAQQQQPQPVPLKNQKIQFRRRGPPLESDSDERGASSPASSDSFPPESFERKRPRVMSSNAGKGSEGRRRAKGWGSAVRELTQAILKFGEAYEHAESSKLQQVVEMEKQRMKFAKDLELQRMQFFMKTQLEISQLKLGRKGANPGNNHHSTTNNNNNNNHNKINSDSE 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03114 476 MobiDBLite consensus disorder prediction 102 126 - -
Vimu11g03114 476 MobiDBLite consensus disorder prediction 452 476 - -
Vimu11g03114 476 Pfam Myb/SANT-like DNA-binding domain 166 256 IPR044822 -
Vimu11g03114 476 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 125 445 IPR044823 -
Vimu11g03114 476 MobiDBLite consensus disorder prediction 293 384 - -
Vimu11g03114 476 MobiDBLite consensus disorder prediction 305 321 - -
Vimu11g03114 476 FunFam trihelix transcription factor ASIL2 169 234 - -
Vimu11g03114 476 Gene3D - 169 234 - -
Vimu11g03114 476 MobiDBLite consensus disorder prediction 112 126 - -
Vimu11g03114 476 MobiDBLite consensus disorder prediction 446 476 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03114 Vimu-Chr11 50615596 50618510 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03114 103 459 Trihelix Transcription Factor Family AT3G14180 47.706 2.08e-103 314
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vimu11g03114 Myb_DNA-bind_4 1.1e-25 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03114 - - gmx:100812599 516.538