Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03111 ATGGATGATTCTTTTTCCTTTGATGGTGACTCCTTCTCAAGCCACCAGAGACGCCACTATCCAACACCGGCGAGTTATCACAGTGTGTCTGGCTCTTTCATACCATCCAGCTTTCACAGCGATGCCACTTCCACAACCAGAACAGGTCGCCGCAACCGAGTTCCTACCACTCCCTTCGCTTCAGACGATGACCATTCATGGCAAGAAGAGGTTTCATGGAAGTTTGAGGCCACAGGGTGGCACCATTACAGCACAAACTATGGTTCTCTTCTGACTCCATGGGCAACCAGCCCCCCTTCTGATCACAGCCGAGTATTTCGACGATCAGCCAATGACTTCTACCTTTCAAGAACAAGTGGGTTCAGAGGTATCTCAAGCTCTTCTTATGAACATTCTGGCTATGGTAGAGTTGAACTTAAGAGCTATGTTGCGAGGGACAATGATCATAGTTACTTTGATCATGGATTATCTACATCAGGGTTCATCCACCAGCAGAGTAGTAGAAAAAGTAAGAGTAGTCCATTGGCCGAAGAAGATGAGCTTAGTATGATAGATTATAGCATAACAGAAGAACGTGTAATTTCACCTATTGTCAATGGTCATGGTCTTGAATCCCCATATCTTAAACATGGTCATGGTGATTATGGTGGGAGTTGCTATGTGGGTCATGGACTACCATCATATGATGGTAGCCATCTAAGTGGAAGTGGTGGGGGCTATACTTATCGCCACCATGACATCGAGAAGCATTCAGGATATGATGAAGAAGGTGAGGAGGACATGGATGAGGAAGATGCAAGTCCTCCAAAGGCTGTTGGATTGTTCAGCTTGTTTAGGTACTCAACAAAGTGGGATTGGATGCTTGTGTTTGTGGGGTGTTTGGGGGCCCTCATAAATGGAGGATCACTTCCTTGGTACTCTTATCTTTTTGGAGACTTGATCAACAAGATTTCAGAAGCAGACAAGGATAAAAAACAGATGATGAAGGATGTAGAAAAGATATGCCTGTTTATGGCGGGGCTAGCTGCTGTTGTGGTAGTTGGAGCATATTTGCAAATCACATGTTGGAGGTTAGTGGGGGAGAGATCTGCACAGAGAATTAGAAGTGAGTATCTGAGAGCAGTTCTTAGACAAGATATTACTTTCTTTGATACAGATATCAACACAGGTGATATTATGCATGGAATTGCAAGTGATGTTGCACAGATTCAAGAAGTCATGGGAGAGAAGGCTTCTTATAGGAAAGCTGGTAGCGTTGCGGAGCAAGCCATAAGCTCAATTAGGACAGTTTTTTCATTTGTTGCAGAAAGCCAATTAGCTGGAAAATATGATGAACTACTGCAGCAATCAGCTCCAATTGGGGCAAAAGTTGGTTTTGCTAAAGGTATAGGCATGGGTGTGATCTACTTAATAACCTATTCAACATGGGCACTGGCATTCTGGTATGGCTCTGTATTAATTGCCAAGAATGAACTTGATGGAGGTTCAGCTATTGCTTGTTTCTTTGGTTTTGCACAAGGGACTGTTGCAGCAAGCCGTGTATTCTATGTTATAGAGAGAATCCCTGAGATTGATCCCTATAGCCCTGAGGGTAGGAAGCTTTCTGGTGTTCGTGGAAGGGTTGAGTTAAAAAGTGTTAGTTTTGCATATCCATCACGTCCTGATTCTCTGATACTTCATTCCCTTAGTTTGATAATACAATCTTCAAAAACTGTGGCATTAGTTGGTGCCAGTGGTGGGGGAAAGTCCACTATCTTTGCTCTCATAGAGAGGTTTTATGATCCTACTGAAGGGATTATTACCTTGGATGGTCATGATTTGAGGACATTGCAAGTAAAGTGGCTACGTGATCAGATTGGGATGGTTGGTCAGGAGCCAGTCCTCTTTGCCACATCTATTCTGGAAAACGTGATGATGGGGAAAGATGGTGCCACAAAGGAAGAGGCAATTGCTGCTTGCATTGCTGCTGATGCTCACAGCTTCATCTCTAGCCTACCACTAAGCTATGACACTCAGGTGGGAGATAGGGGGACAAAACTCTCCGGAGGTCAGAAGCAGAGAATTGCATTGGCTCGAGCAATGATGAAAGATCCTAAAATCCTTCTACTAGATGAACCTACTAGTGCTCTTGATGCTGAGTCAGAGTCTGCGGTCCAACGGGCAATTGATAAGATTTCTGCTGGACGAACAACCATTGTGATTGCTCACAGGATAGCAACAGTGAAGAATGCTCATACCATTGTGGTTCTTGAACATGGTTCTGTCATTGAGATTGGTGACCATCGACAGCTTATGTCAAAAGCAGGAGCATACCACAACCTTGTCAAGCTTGCTACCGAAGCCATTTCAAAACCTCTAGCTATAGAGAATGGCATACAAAAAGCCGATGATCTATCCATCTATGATAAATCTGTTGCTGCTTTATCACGATCAAGATACATGGTTGATATCCCTATGCCTAAAGACTTAATATCTATGCATGGGGTGGAGAAACAGGAAGACGTGGAAGATGATGAACATGACACAAAGGCAAAAAAATACAGCCTTTCTCAAGTATGGAAACTGCAAAAGCCAGAGCTTGTGATGCTATTTTCAGGACTTATTCTGGGAATGTTTGCTGGTGCTATTCTGTCCCTTTTCCCATTGGTTTTAGGCATATCCTTGGAAGTATATTTTGGTCATGACACTCATAAGATGAAAAGAGATGTTGCACACCTTTGTTTAACACTTGTTGGCCTTGGAATTGGTTGCATACTTTCCATGACAGGACAACAAGGTCTGTGTGGTTGGGCTGGATCAAAGCTGACACAAAGAGTTAGATACATCTTGTTTCAATCCATACTGAAACAAGAACCTGGGTGGTTTGACTTTGAAGAAAACTCTACGGGAGTGTTGGTATCAAGGCTCTCACTCGACTGTGTTAGTTTTCGATCAGTACTCGGTGACAGATTCTCGGTCCTTCTTATGGGGTTGAGTTCAGCTGCTGTTGGCCTTGGTGTGTCCTTTGCCTTCAATTGGAGACTAACGCTTGTGGCAGCTGCTGTAACTCCTTTTGCACTTGGTGCAAGCTACATAAACTTGATCATAAACGTCGGGCCGCGTGTGGACAACGACTCTTATGGCAAAGCCAGTAACATTGCTTCTGGTGCAGTGTCGAACATAAGGACAGTTACCACATTTTCTGCCCAGGAACAGATAGTTAAGTCCTTTGATAGAGCCCTATCAGAACCTAAAAGAAAATCATTACGAAGATCACAACTTCAAGGTCTTATGTTTGGGTTGTTTCAAGGTTCCATGTATGGAGCATACACCTTAACACTTTGGTTTGGCGCATACCTTGTACAACATGACAAGGCAAAACTTGGAGACGTGTTTAAGATCTTTCTCATTCTTGTTCTGAGCTCATTCTCTGTGGGACAACTAGCTGGCTTGGCACCAGATACTTCTACGGCGGCTACGGCAATTCCTGCAGTTCAAGATATCATAAAACGCAGGCCACTGATTGACAATGATAGAACAAAAGGTAGGAAAGTAGACAGATCAAAGCCATTCAACATAGAATTCAAGATGGTGACTTTTACATACCCATCTAGGCCAGAAGTGACTGTGTTGAGGGACTTCTGTTTAAAGGTCAAAGGTGGAAGCACAGTGGCCTTGGTGGGACCAAGTGGATCAGGGAAGTCAACGGTCATATGGTTGACTCAGAGGTTCTATGATCCTGATCAAGGAAAGGTGATGATGAGTGGGACAGATTTGAGAGAGATCGATGTAAAGTGGTTGAGGAGGCAAATGGCTTTGGTGGGTCAAGAACCTGCACTGTTTGCTGGGAGCATAAGGGAGAATATTGCATTTGGGGACCCAAATGCTTCATGGTCTGAAATTGAAGAGGCTGCAAAGGAGGCTTACATCCACAAGTTCATCAGTGGCCTTCCTCAGGGTTATGAGACACAGGTTGGTGAAAGTGGGGTCCAGTTATCAGGTGGCCAGAAACAACGAATTGCTATAGCAAGGGCCATATTGAAGAGATCAAGGGTGCTTTTGCTTGATGAGGCAAGCAGTGCCTTGGACTTGGAATCAGAGAAGCACATCCAAGAAGCCCTTAAAAATGTTGCCAAAGATGCAACAACCATAATAGTTGCTCACCGTCTTTCCACGATCAGAGAAGCTGATAAGATCGCAGTTATGAGAGACGGGGAAGTGGTGGAGTATGGGAGCCATGACACTCTCATGGCTTCAACTCAAAATGGCTTGTATGCTAGCCTAGTTCGAGCTGAGACAGAAGCCAATGCCTTTTCTTGA 4299 0.4413 MDDSFSFDGDSFSSHQRRHYPTPASYHSVSGSFIPSSFHSDATSTTRTGRRNRVPTTPFASDDDHSWQEEVSWKFEATGWHHYSTNYGSLLTPWATSPPSDHSRVFRRSANDFYLSRTSGFRGISSSSYEHSGYGRVELKSYVARDNDHSYFDHGLSTSGFIHQQSSRKSKSSPLAEEDELSMIDYSITEERVISPIVNGHGLESPYLKHGHGDYGGSCYVGHGLPSYDGSHLSGSGGGYTYRHHDIEKHSGYDEEGEEDMDEEDASPPKAVGLFSLFRYSTKWDWMLVFVGCLGALINGGSLPWYSYLFGDLINKISEADKDKKQMMKDVEKICLFMAGLAAVVVVGAYLQITCWRLVGERSAQRIRSEYLRAVLRQDITFFDTDINTGDIMHGIASDVAQIQEVMGEKASYRKAGSVAEQAISSIRTVFSFVAESQLAGKYDELLQQSAPIGAKVGFAKGIGMGVIYLITYSTWALAFWYGSVLIAKNELDGGSAIACFFGFAQGTVAASRVFYVIERIPEIDPYSPEGRKLSGVRGRVELKSVSFAYPSRPDSLILHSLSLIIQSSKTVALVGASGGGKSTIFALIERFYDPTEGIITLDGHDLRTLQVKWLRDQIGMVGQEPVLFATSILENVMMGKDGATKEEAIAACIAADAHSFISSLPLSYDTQVGDRGTKLSGGQKQRIALARAMMKDPKILLLDEPTSALDAESESAVQRAIDKISAGRTTIVIAHRIATVKNAHTIVVLEHGSVIEIGDHRQLMSKAGAYHNLVKLATEAISKPLAIENGIQKADDLSIYDKSVAALSRSRYMVDIPMPKDLISMHGVEKQEDVEDDEHDTKAKKYSLSQVWKLQKPELVMLFSGLILGMFAGAILSLFPLVLGISLEVYFGHDTHKMKRDVAHLCLTLVGLGIGCILSMTGQQGLCGWAGSKLTQRVRYILFQSILKQEPGWFDFEENSTGVLVSRLSLDCVSFRSVLGDRFSVLLMGLSSAAVGLGVSFAFNWRLTLVAAAVTPFALGASYINLIINVGPRVDNDSYGKASNIASGAVSNIRTVTTFSAQEQIVKSFDRALSEPKRKSLRRSQLQGLMFGLFQGSMYGAYTLTLWFGAYLVQHDKAKLGDVFKIFLILVLSSFSVGQLAGLAPDTSTAATAIPAVQDIIKRRPLIDNDRTKGRKVDRSKPFNIEFKMVTFTYPSRPEVTVLRDFCLKVKGGSTVALVGPSGSGKSTVIWLTQRFYDPDQGKVMMSGTDLREIDVKWLRRQMALVGQEPALFAGSIRENIAFGDPNASWSEIEEAAKEAYIHKFISGLPQGYETQVGESGVQLSGGQKQRIAIARAILKRSRVLLLDEASSALDLESEKHIQEALKNVAKDATTIIVAHRLSTIREADKIAVMRDGEVVEYGSHDTLMASTQNGLYASLVRAETEANAFS 1432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03111 1432 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 866 1150 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu11g03111 1432 SUPERFAMILY ABC transporter transmembrane region 851 1169 IPR036640 GO:0005524|GO:0016020
Vimu11g03111 1432 SMART AAA_5 1213 1399 IPR003593 GO:0016887
Vimu11g03111 1432 SMART AAA_5 568 769 IPR003593 GO:0016887
Vimu11g03111 1432 FunFam ABC transporter B family member 1 531 779 - -
Vimu11g03111 1432 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1182 1423 IPR027417 -
Vimu11g03111 1432 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 533 777 IPR027417 -
Vimu11g03111 1432 Pfam ABC transporter transmembrane region 865 1134 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu11g03111 1432 Pfam ABC transporter transmembrane region 289 411 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu11g03111 1432 CDD ABC_MTABC3_MDL1_MDL2 1186 1424 - -
Vimu11g03111 1432 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 541 777 IPR003439 GO:0005524
Vimu11g03111 1432 Gene3D - 1184 1426 IPR027417 -
Vimu11g03111 1432 Gene3D - 539 799 IPR027417 -
Vimu11g03111 1432 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 290 523 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu11g03111 1432 ProSitePatterns ABC transporters family signature. 680 694 IPR017871 GO:0005524|GO:0016887
Vimu11g03111 1432 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1186 1422 IPR003439 GO:0005524
Vimu11g03111 1432 Pfam ABC transporter 559 708 IPR003439 GO:0005524
Vimu11g03111 1432 Gene3D ABC transporter type 1, transmembrane domain 411 1027 IPR036640 GO:0005524|GO:0016020
Vimu11g03111 1432 Pfam ABC transporter 1205 1352 IPR003439 GO:0005524
Vimu11g03111 1432 SUPERFAMILY ABC transporter transmembrane region 277 693 IPR036640 GO:0005524|GO:0016020
Vimu11g03111 1432 CDD ABC_MTABC3_MDL1_MDL2 541 778 - -
Vimu11g03111 1432 Gene3D ABC transporter type 1, transmembrane domain 269 410 IPR036640 GO:0005524|GO:0016020
Vimu11g03111 1432 PANTHER ABC TRANSPORTER B FAMILY 830 1424 IPR039421 -
Vimu11g03111 1432 MobiDBLite consensus disorder prediction 1 26 - -
Vimu11g03111 1432 MobiDBLite consensus disorder prediction 7 26 - -
Vimu11g03111 1432 CDD ABC_6TM_Pgp_ABCB1_D2_like 853 1168 - -
Vimu11g03111 1432 ProSitePatterns ABC transporters family signature. 1325 1339 IPR017871 GO:0005524|GO:0016887
Vimu11g03111 1432 MobiDBLite consensus disorder prediction 40 62 - -
Vimu11g03111 1432 FunFam ATP-binding cassette transporter, subfamily B, member 2, group MDR/PGP protein PpABCB2 1037 1177 - -
Vimu11g03111 1432 FunFam ABC transporter B family member 1 1175 1426 - -
Vimu11g03111 1432 CDD ABC_6TM_Pgp_ABCB1_D1_like 290 514 - -
Vimu11g03111 1432 Gene3D ABC transporter type 1, transmembrane domain 1036 1182 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03111 Vimu-Chr11 50577943 50594548 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03111 894 1429 Calmodulin-binding Proteins AT2G36910 38.290 9.34e-109 373
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03111 K05658 - gmx:100816700 1790.78