Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03108 ATGGCGAACGAAGATTCTCCTATGGAACTGTACGAAATCTCTACGGAATCCGAAGGATCCGACTCCGATTCCGACTGGGAGGACTCGGGAGAAGATCCCGATTACGACGCGCTCGAAGAAAGTCATAGCAAATTCTCAAACCTCTCACTTAAGCACAAGGCAAAAGCGCGCTTTATCGAGGAGAAGGATCCAGGAGAGGAAGTGTTGGTGGTCACTGCATCTGTAAATGATGGAGAGAATTTTGGGAAAGTTCAAAAGTTAATCGAAGAGGGATTGTTGGAGAAATTGAAAGTGGATGAATGCAAGTTGTATTTGAGGAAGAATGGTCTGAGGCTAACTGGAAACAAGGACACACTTATAGAACGCATAAGGGAGCACTTGGAGTTTAACATCGCATCCAGGAGTGCTAGTGGTCCACCTTGTGGCAAAAGGATTGTTGCAGGCCGCATAGTGAAAGAAAGCTATGGTGCTGCTAAACAACAGCATACATTTACGATTGAAGTGCTCTGGAGTAAAGGAGAAAAGCCTCTCCCTCCCCTTTACCCCCTACTGATTAAGGGTCGAAACCTTTACAAGCTGAAGACTTTGAGACAGAAATGGGAAGATGAAGCAGAAAGGCAGAAAATAATGATGGAAAAACACTCAAGGGGATCTCTTGCTAGGGCAGATAGAGAAGAAAGGATTCAGGAAAAGGAGAAGAGGAAGAATTCTAAGGAAAACAGGATCTCCAAAAAGGAAGCAACGAACCAACTTCAATCAAATTCACACATTACAAGGCCACAATATCAACCTCAAGGAACAAATGTAGTCATTAATCCAGAAAACCCTGGATTTCCATCTCGAAATTCAGTTTTATCTGTCAATATAATGAAAGAAAGATACTGTATTTTAAATAATCCAGCAGCAACTTTTGGTGGAACATCATTTACTGTTCACAGTATGCATAATCAACAAGCTTGGAATCACACAAGTGACTTTAGGAATACTTTTCATATTGGTCGTGTGCGAGGAGCAGAAACTGGTGCAAACTATAATTACACAGACCCCCATTTCAGAGAAAACCAACCTAGATTTGCGAACTGCCACCCTAACATGGCTGAAATGGGCAATCATCATAGGATACCTTTGGCAAATGCAAACCATTCTCACCCATTTATGGCCCCCAACAGAGAAAGCTTTAAGATAAATCAAGTGTGCAGACATTATTCCCGTGGAAGGTGCCATTTTGGGGACAACTGCAAATTCTTACATGATCTTAGAGACAAAAGGAATGCATGA 1278 0.4218 MANEDSPMELYEISTESEGSDSDSDWEDSGEDPDYDALEESHSKFSNLSLKHKAKARFIEEKDPGEEVLVVTASVNDGENFGKVQKLIEEGLLEKLKVDECKLYLRKNGLRLTGNKDTLIERIREHLEFNIASRSASGPPCGKRIVAGRIVKESYGAAKQQHTFTIEVLWSKGEKPLPPLYPLLIKGRNLYKLKTLRQKWEDEAERQKIMMEKHSRGSLARADREERIQEKEKRKNSKENRISKKEATNQLQSNSHITRPQYQPQGTNVVINPENPGFPSRNSVLSVNIMKERYCILNNPAATFGGTSFTVHSMHNQQAWNHTSDFRNTFHIGRVRGAETGANYNYTDPHFRENQPRFANCHPNMAEMGNHHRIPLANANHSHPFMAPNRESFKINQVCRHYSRGRCHFGDNCKFLHDLRDKRNA 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03108 425 SUPERFAMILY CCCH zinc finger 395 418 IPR036855 GO:0046872
Vimu11g03108 425 Coils Coil 221 248 - -
Vimu11g03108 425 Gene3D - 387 425 - -
Vimu11g03108 425 ProSiteProfiles Zinc finger C3H1-type profile. 393 420 IPR000571 GO:0046872
Vimu11g03108 425 MobiDBLite consensus disorder prediction 246 275 - -
Vimu11g03108 425 MobiDBLite consensus disorder prediction 1 41 - -
Vimu11g03108 425 ProSiteProfiles SAP motif profile. 93 127 IPR003034 -
Vimu11g03108 425 Pfam CCCH-type zinc finger 398 418 IPR041367 -
Vimu11g03108 425 Gene3D SAP domain 80 140 IPR036361 -
Vimu11g03108 425 SMART c3hfinal6 394 419 IPR000571 GO:0046872
Vimu11g03108 425 Pfam SAP domain 93 127 IPR003034 -
Vimu11g03108 425 SMART sap_9 93 127 IPR003034 -
Vimu11g03108 425 MobiDBLite consensus disorder prediction 207 245 - -
Vimu11g03108 425 PANTHER SAP DOMAIN-CONTAINING PROTEIN 15 129 - -
Vimu11g03108 425 MobiDBLite consensus disorder prediction 16 35 - -
Vimu11g03108 425 SUPERFAMILY SAP domain 83 128 IPR036361 -
Vimu11g03108 425 MobiDBLite consensus disorder prediction 207 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03108 Vimu-Chr11 50561366 50564284 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vimu11g03108 SAP 5.2e-10 CL0306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03108 - - gmx:100815642 531.946