Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03101 ATGTCAAGTTTCCCCAACACAGTGTCGGAAGGCCGGAGGTTTGGCAAGGCGCCGGAAAAATCCTCTTTTTCTCAGACTTGCAGTCTCTTGAGCCAGTTCTTGAAGGAGAAACGAGCTTCTGGTGATTCCAACCTTGGAATGGGTGGGAAAATGGAACCTAAAGGTAGAAAGTGTGTGAAATTGCTTCTGATGAGAATTGCTGATGGGGGTGTTTTTTGTTTGGATTTGGAAATTCCAGCTAGTACGAAGGATTTGTTTGGCAGCCTGCAAAACTCAGATGGGGCTTTGAAACTAAGCGCTTCTGCCATGGATTTTCTTCCCCAGCTTGTGGAAAACCCCTGCATTAAGAAGCCTAATCTTAGATCAGCGGTTCCTGAATCTCCTCAAATGACAATATTCTATGCTGGAAAAATGTTGGTATTCGATGGTTTTCCTCCGGAGAAGGCAACAGAGGTGATGGAGTTGGCCACCAAGCTGGCGTTGGACAGTTCCGGCGGCGAAGAAACTCCCCCTAGTGCTCCGGTTACCACCAAAGAATTGGCTGAGACCAAAGTGCCTCAGACAAACACCTCAGAAGCCCCTAAGCCAGGAAGCCAAGGGGTTGGTTCAGATATGAGGTATCCAAGAAGAGCTTCACTTCTAAAATTTCTTGAGAAAAGAAAAGAAAGGGTTAATGCGAGAGGGCCTTATCAACTGAACAATCAGAAACCAGAAGGAAGCATTTCAGGTGGTGATCCTGAAGATCAGTGTTCTAAACAGTTTGACCTTAACTTGTAG 777 0.4607 MSSFPNTVSEGRRFGKAPEKSSFSQTCSLLSQFLKEKRASGDSNLGMGGKMEPKGRKCVKLLLMRIADGGVFCLDLEIPASTKDLFGSLQNSDGALKLSASAMDFLPQLVENPCIKKPNLRSAVPESPQMTIFYAGKMLVFDGFPPEKATEVMELATKLALDSSGGEETPPSAPVTTKELAETKVPQTNTSEAPKPGSQGVGSDMRYPRRASLLKFLEKRKERVNARGPYQLNNQKPEGSISGGDPEDQCSKQFDLNL 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03101 258 MobiDBLite consensus disorder prediction 161 258 - -
Vimu11g03101 258 ProSiteProfiles Tify domain profile. 123 158 IPR010399 -
Vimu11g03101 258 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 15 238 IPR040390 -
Vimu11g03101 258 MobiDBLite consensus disorder prediction 211 226 - -
Vimu11g03101 258 MobiDBLite consensus disorder prediction 181 197 - -
Vimu11g03101 258 Pfam tify domain 125 156 IPR010399 -
Vimu11g03101 258 Pfam Jas motif 209 231 IPR018467 -
Vimu11g03101 258 SMART tify_2 123 158 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03101 Vimu-Chr11 50492659 50494542 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03101 11 232 Tify Gene Family AT1G19180 33.475 1.87e-23 94.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Vimu11g03101 tify 3.1e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03101 K13464 - gmx:100778559 374.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g03101 11 50492659 50494542 Vimu11g03101 11 50492659 50494542 ECH