Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03099 TTGAGCCAAATTTTGAGCAGAGTAATGGCCATAGCTCTGGCAACAATTCTCCAGCCAACTCTCATCATCATCATCGTCACTTTGCCTGTGATATATTCCATGACAGAAGCTGAAGCTTTGGTAAGTCTCAAAAGCACTTTCACCAACGCTCAACTTTTAGATGGTTGGGTGCCTGGTTCTGCACCTTGTAGTGATCATCAATGGGAAGGTGTTGTTTGCAACAATGGCCTTGTCACGGGGCTTCGCCTTGGAGGAATAGGGTTAGTCGGGGAAATACACGTTGATCCATTGCTTGAACTCAAGGGTCTTCGAACTATTAGCCTTAACAACAACTCTTTCACAGGTTCCATGCCAGAGTTCAACCGAATAGGCTTTTTGAAAGCCTTGTATTTGCAAGGAAACAAGTTTTCTGGGGATATTCCTCAGGAATACTTCCAGAGAATGAGGTCTTTGAAGAAAGTGTGGCTATCTGATAACCAATTCACGGGGAATATTCCACAATCATTGACTGAGATTTCTAGTCTTATGGAGTTGCACCTTGAAAATAACCAGTTTAGTGGAACCATTCCGGATTTCAAAAACCCAACATTGGAGGACATAAACGTTTCCAACAACAAATTGGAAGGTGAAATTCCAGCTAGTTTGTCGAGATTCAGTGAGAACAGGTTTTCTGGGAATTCTGGTCTTTGTGGTGAGAAGGTTGGCAAATCATGTGAAAAGCCAGCGGAGGCCCAAAGTCCTGCTCCCATTGATGCATCGGATGCTGGTGGTGATTCGCCTGTGCCACATGGTAATACCCCATGGGAGGTTGCTGCCATTATAGTAGTGAGTGTAGTGCTTGTTTCAATAGTTGTATTTTTCATTGTGAGAACAAGAAAAAAGAAGGAGGAGGAGCGGTTTGATATCCTTGGAAATGATGCTAATGGTGGTGGTTCAGTGGAAGTTCAAGTGGCTCCAACAGTGAAAAGGGATGTGGATGCAAATACATTGCCAGCAGTTAAAAAATCATCGTCCAGAAGAGGATCTGCAGGTTCTCAAACTAAAGGCGTTGGAGAACTTGTGATAGTGAATGATGAGAAGGGTGTGTTTGGATTGCCAGATTTGATGAGGGCAGCAGCAGAAGTTCTGGGAAACGGAAGCTTTGGATCTTCTTACAAAGCCGTCATGGCTAATGGAGTGGCAGTGGTGGTGAAAAGGACCAGAGAGATGAATGTTTTGGAAAAAGATGGTTTTGATGCAGAGATGAGGAAGCTCACTTCGCTTAAACACTGGAATATATTGACCCCTTTAGCTTATCATTTCAGAAAGGATGAGAAACTAGTGATCTCCGAGTATGTTCCCAAAGGCAATCTACTGTTTTCACTTCATGGTAAGGCTTCTTCTTCCAAAGTTCTTCAACTCAACATTTTCAAATGGGAAGAACTTTTAGATATTGGTTTCTCACAAGGGTTTGCATTAACCAAGATTAGTAAAAAGAAACTTTACCTAAGTGATAGAGGATCATCGCATAGTGAGCTAGATTGGCCAGCACGTATGAAGGTTGTAGGTGGAATTGCGGAAGGGATGAATTATCTTCACAAAGAACTTGGTTCCTCAGATCTCCCACATGGGAATCTCAAGTCCAGCAACGTTCTTCTGGGACCAGACAATGAACCACTGCTAGTAGATTACGGGTTCAGCGGCATGGTTAACCCTTCAAGTGCTGCACAGACACTATTTGCTTACAAGGCACCAGAGGCAGCAGAAAACGGGGAAATTTCACACAGCTGTGATGTTTACTGTCTCGGGGTTGTGATACTTGAGATACTGACTGGGAAATTTCCTTCACAATATCTTAGCACGGGCAAAGGTGGAACTGATGTGGTGCAATGGGTTGAAACAGCAATCTCAGAGGGAAGGGTGGCTGAAGTGGTTGATCCTGAAATTGCAAACTCTAGAAAATCGGTAGGTGAGATGGAGCAACTCCTGCACATCGGTGCTGCTTGCACCAGAAGCAACCCTCTGCAACGGTTAAGCATGGAGGAAGCCTTTAGAAGGATAGATGAGGTAAGATCCGAGAGTGGGCTTGGGAAAGAATCAAGAACGATAGAGGTTTTGCCATCTTTGGTAGATGAGTATGAAGATGCACAACAATTTGAGAGCCAAGGGCACAGGAGACATGGAACAGATAGCTTCGGAAGTGTGGATAATATTGAACTTGGCAGCTCCTAG 2211 0.4401 MSQILSRVMAIALATILQPTLIIIIVTLPVIYSMTEAEALVSLKSTFTNAQLLDGWVPGSAPCSDHQWEGVVCNNGLVTGLRLGGIGLVGEIHVDPLLELKGLRTISLNNNSFTGSMPEFNRIGFLKALYLQGNKFSGDIPQEYFQRMRSLKKVWLSDNQFTGNIPQSLTEISSLMELHLENNQFSGTIPDFKNPTLEDINVSNNKLEGEIPASLSRFSENRFSGNSGLCGEKVGKSCEKPAEAQSPAPIDASDAGGDSPVPHGNTPWEVAAIIVVSVVLVSIVVFFIVRTRKKKEEERFDILGNDANGGGSVEVQVAPTVKRDVDANTLPAVKKSSSRRGSAGSQTKGVGELVIVNDEKGVFGLPDLMRAAAEVLGNGSFGSSYKAVMANGVAVVVKRTREMNVLEKDGFDAEMRKLTSLKHWNILTPLAYHFRKDEKLVISEYVPKGNLLFSLHGKASSSKVLQLNIFKWEELLDIGFSQGFALTKISKKKLYLSDRGSSHSELDWPARMKVVGGIAEGMNYLHKELGSSDLPHGNLKSSNVLLGPDNEPLLVDYGFSGMVNPSSAAQTLFAYKAPEAAENGEISHSCDVYCLGVVILEILTGKFPSQYLSTGKGGTDVVQWVETAISEGRVAEVVDPEIANSRKSVGEMEQLLHIGAACTRSNPLQRLSMEEAFRRIDEVRSESGLGKESRTIEVLPSLVDEYEDAQQFESQGHRRHGTDSFGSVDNIELGSS 736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03099 736 Pfam Leucine rich repeat 126 185 IPR001611 GO:0005515
Vimu11g03099 736 ProSiteProfiles Protein kinase domain profile. 370 684 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g03099 736 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 24 687 IPR046959 -
Vimu11g03099 736 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 94 189 - -
Vimu11g03099 736 Pfam Leucine rich repeat N-terminal domain 36 74 IPR013210 -
Vimu11g03099 736 MobiDBLite consensus disorder prediction 710 736 - -
Vimu11g03099 736 SUPERFAMILY Protein kinase-like (PK-like) 374 680 IPR011009 -
Vimu11g03099 736 SUPERFAMILY L domain-like 60 218 - -
Vimu11g03099 736 Gene3D Transferase(Phosphotransferase) domain 1 493 693 - -
Vimu11g03099 736 MobiDBLite consensus disorder prediction 710 725 - -
Vimu11g03099 736 Gene3D Phosphorylase Kinase; domain 1 352 445 - -
Vimu11g03099 736 Pfam Protein tyrosine and serine/threonine kinase 374 675 IPR001245 GO:0004672|GO:0006468
Vimu11g03099 736 Gene3D Ribonuclease Inhibitor 196 231 IPR032675 -
Vimu11g03099 736 Gene3D Ribonuclease Inhibitor 34 193 IPR032675 -
Vimu11g03099 736 MobiDBLite consensus disorder prediction 238 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03099 Vimu-Chr11 50464856 50467163 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03099 14 683 Receptor kinase-like Gene Family AT3G42880 42.067 0.0 541
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vimu11g03099 PK_Tyr_Ser-Thr 3.3e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03099 - - var:108346415 1242.25