Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03088 ATGTCTGCACCGATGATCATTGACCCTGTGGTGATATCGGCACCAGAAACTCAATCAGCAGCTAGCATACTAGTTGCACAAAGTGAAGTTGAATTTGCTGTGTGTGACTGTTGTGGACTAACAGAAGAGTGCACCCCAGCCTATATAGAAAGAATCAGGGAGAGGTACCATGGAAAATGGGTCTGTGGGTTGTGTGCTGAGGCTGTCAAGGATGAAATTGTGAGGTCTGAGAGGCTTGTCTGCACAGAAGAAGCAATGGCAAAGCATATGAACTTCTGCAAAAAGTTCAAGGCATCAGGGCCTCCTCCAAATCCAACAGTGCATTTGATATCTGCTATGAGACAAATTCTTAGAAGGAGTTTGGATTCTCCTAGAGTAAGGTCCACACCTAATAGTCCAACTAAGACTATCACAGAAATCCATGGTTCTGTTCTTGCAAGGTCTGAGAGCTGCTTCCCTACCCTCACTGAAGGATTGGGATGA 483 0.4534 MSAPMIIDPVVISAPETQSAASILVAQSEVEFAVCDCCGLTEECTPAYIERIRERYHGKWVCGLCAEAVKDEIVRSERLVCTEEAMAKHMNFCKKFKASGPPPNPTVHLISAMRQILRRSLDSPRVRSTPNSPTKTITEIHGSVLARSESCFPTLTEGLG 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03088 160 Pfam Protein of unknown function (DUF1677) 30 119 IPR012876 -
Vimu11g03088 160 PANTHER OS01G0745000 PROTEIN 22 157 IPR012876 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03088 Vimu-Chr11 50376045 50379183 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03088 - - gmx:100803697 308.145
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03078 10 41658670 41659101 Vimu11g03088 11 50376045 50379183 ECH
Vimu11g03088 11 50376045 50379183 Vimu11g03088 11 50376045 50379183 ECH
Vimu11g03088 11 50376045 50379183 Vimu10g03077 10 41654891 41655331 ECH
Vimu11g03088 11 50376045 50379183 Vimu1g02695 1 38902548 38903841 ECH