Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03085 ATGCAACTTACAGCTAGGAATCCTGAAATTGGACGGTGCCAATTGAAGCTCTCGGCGTCAGGATCGTTTAGGCGCCTACCGATCGAAATTCTAACGGTTCAGTTGAGAGAAAAGCTAACAAGGTTTTCCTCTGGCGGAAGGCGAAGGAACATCGAAAACCCCAAAAGCAGTACCTTTATGAACCCTGACTACTCTGTTTCTTCAATTCATCGGATCGAAACCCTAGACTATTTTCCGTCTCTGGGATTTCATAATTCGGATTCCAAATTCCTTCCTTGGATATCAATATTGGAAATGAAAGCGCCAAATACCTTTTTTGATGCACAACATAGAAGTTTTCGTGGGGTTTTCAACTTTTTGTGTGTCGGGGTTTTGTTTTTCTTCTTTTACAATCGCGACGACATCATTCGCAACCCGATTCTCAGGCAATCCTCCTATTTTGTTAGCAACAAGTTGCCTCAAAATGCGATTTTGAGAGATGGGTCTTCTGTGATTCATCGTCGAATGGTTGAAATCGGCGCTAACACGTCAGGTGTTGGCGGTGAGAATGATTTAGGTGTGAGATATTCTGAATTCTGTTCTGGGTTGGTCCACCATGATGGTTATGCTAGTTCCTGTGAATTCTTAGAGGTTCATCCAGAGTGCTCTTCTGATGGATACCTTGATTACTTGAAATTTTTCTATTGTACATGTCAGGGTTTTAGAGTTTTTGGTTATCTAGGGTTGGGTGTATGGCTTGCTGCTTTGTTTTATCTCTTGGGGAACACTGCTGCAGACTACTTTTGCCCTTCACTTGAGAGATTGTCAAGGCTCTTGAAATTGCCTCCAACCGTAGCTGGGGTTGTGTTGCTTCCACTTGGGAATGGAGCACCTGACGTGTTTGCTAGTATAGCTTCCTTTGTGGGTGCTGAAAGTGGTGAGGTTGGTCTTAACAGTGTGTTGGGTGGTGCTCTTTTTGTTACCACTATTGTTGTTGGAACTGTGTCGCTATGCGTTGCGGAGAAGGAGGTTGGAATTGATCGAAGATGCTTTATAAGGGATGTGAGTTTCTTTCTTCTGACTCTGTTTTCGCTGCTTATGATTTTGGTTATTGGTAAGTTGGGTGTTGGGGCGGCCATTACTTTTGTATCCATTTATTTTGTGTATGCGTTCATTGTTGCTGCCAATGAGATATTGAGGAAACATGCACAGAGATTGAAATTAGATGTTGTCACACCATTGCTTCCTGTCCAGGGAAGTGTGTTCTCTCTAGGCGTGGAAGATGACATTCCGATGTATAGCCCTCTGCTTGAAGACACTGAAAGCGATCCTCCCCGCCTTCCTCCATCGTTGCCACAGTGGATGTGGTCTTCAAATGTGGCAATATATTCAAATCAAACAAGCAAAATCAGCTTTTTGGATGATGAAAGTCCTCCCTGGGGATGGACTGATGGGTCTGGGGAGAACACCAGGGTGTCCTTCTCAGTTTCAAAACTTTTTCTGCTGATGGAGATTCCACTGGCTATTCCTAGGCGATTCACAATTCCAATGGTCAACGAAGAAGTATGGTCAAAACCTTATGCTGTCATCAGTGCTTCATTGTCTCCCATTCTCCTGGGCCTTTTGTTTAGCACCAGAGACAGTGTGAGTAATCAGGGTGTTATTCTTTCTTATTGTGTTGGTGTTGGTCTTGGATGTACATTTGGTGTTCTCGCTTATAAATACACAGTATCTGATCATCCACCACGTCAAGTTTTGCTTGCTTGGGTACTTGGAGGATTCATCATGAGCATAGTGTGGTTCTACATAATAGCAAACGAGCTTGTGGCTCTATTGGTAGCATTTGGTGTAATTTTCGGAATTAACCCATCCATCTTGGGGTTAACTGTATTAGCATGGGGAAATTCGATGGGAGATTTGATGTCAAATATTGCATTGGCATTGGATGGAGAAGATGGAGTTCAGATTGCTATATCTGGATGCTATGCAGGTCCTATGTTCAACACACTTATTGGTTTGGGAATCTCGCTGCTACTTGGGACCTGGTCTAAGAAACCCTCTTTGTACGTGGTGCCTAAAGATAGGAGCTTATTTTACACCATGGGATTTTTGATCGCAGGACTGCTATATGCACTTGTTTTGCTACCTACCAAGAACATGCATCCTAACAGAACATTAGGAATGGGTCTCATCACCCTTTATGTGATATTTCTTTCTTTCAGGATATGTACTGCAATGGGATTTCTAACAGTTGCTGGTTTAAATTTTACTGTTCAAGCGAATTTGCGAGCGATGAATGATTTTAAAATTGTGTTCTCATGCGCTGATTTAAGAGGAAGGAAAACCAATGATTTACGATCATTTACCATGGATTGCACTGTTCAAGAACGTATTCGGATACACCCTTCTTGTATCCTGATCCAGTTTCTTCAGCGTTTTCCTTTGGAAGGGTATCCGGATACACTCTTCCTTATTCGGATCCATGTTGTCTTTCGTTTTGCTTAG 2484 0.4267 MQLTARNPEIGRCQLKLSASGSFRRLPIEILTVQLREKLTRFSSGGRRRNIENPKSSTFMNPDYSVSSIHRIETLDYFPSLGFHNSDSKFLPWISILEMKAPNTFFDAQHRSFRGVFNFLCVGVLFFFFYNRDDIIRNPILRQSSYFVSNKLPQNAILRDGSSVIHRRMVEIGANTSGVGGENDLGVRYSEFCSGLVHHDGYASSCEFLEVHPECSSDGYLDYLKFFYCTCQGFRVFGYLGLGVWLAALFYLLGNTAADYFCPSLERLSRLLKLPPTVAGVVLLPLGNGAPDVFASIASFVGAESGEVGLNSVLGGALFVTTIVVGTVSLCVAEKEVGIDRRCFIRDVSFFLLTLFSLLMILVIGKLGVGAAITFVSIYFVYAFIVAANEILRKHAQRLKLDVVTPLLPVQGSVFSLGVEDDIPMYSPLLEDTESDPPRLPPSLPQWMWSSNVAIYSNQTSKISFLDDESPPWGWTDGSGENTRVSFSVSKLFLLMEIPLAIPRRFTIPMVNEEVWSKPYAVISASLSPILLGLLFSTRDSVSNQGVILSYCVGVGLGCTFGVLAYKYTVSDHPPRQVLLAWVLGGFIMSIVWFYIIANELVALLVAFGVIFGINPSILGLTVLAWGNSMGDLMSNIALALDGEDGVQIAISGCYAGPMFNTLIGLGISLLLGTWSKKPSLYVVPKDRSLFYTMGFLIAGLLYALVLLPTKNMHPNRTLGMGLITLYVIFLSFRICTAMGFLTVAGLNFTVQANLRAMNDFKIVFSCADLRGRKTNDLRSFTMDCTVQERIRIHPSCILIQFLQRFPLEGYPDTLFLIRIHVVFRFA 827
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03085 827 Gene3D - 526 736 IPR044880 -
Vimu11g03085 827 Gene3D - 274 407 IPR044880 -
Vimu11g03085 827 Pfam Sodium/calcium exchanger protein 244 386 IPR004837 GO:0016020|GO:0055085
Vimu11g03085 827 Pfam Sodium/calcium exchanger protein 583 735 IPR004837 GO:0016020|GO:0055085
Vimu11g03085 827 PANTHER NA+/CA2+ K+ INDEPENDENT EXCHANGER 117 742 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03085 Vimu-Chr11 50363275 50371920 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03085 190 742 Antiporters AT5G17860 41.441 9.27e-136 412
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03085 K13754 - gmx:100796101 1095.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g03085 11 50363275 50371920 Vimu11g03085 11 50363275 50371920 ECH