Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03071 ATGTCCCATCACCAGCAAGCCTTAGTGTCTCTTCTCTCCCAACTCGCCCTTTCCTTCGACGGCGCCGTTTTGGGCTTCGCCTTGGCCTACGCCGCCATCCGCACCTTCTTCAAATTCTCTGCCACTTCTGCCGCCCTCCGCAAGCTCCGCCGCGCACCTTACCTCTCTGTTTCCGACCTCCGATCACTCCTCGCCGATGTTCCCTCTGACGCTGACTCTACCTCTGACGGTGGTACAATCGTAATTGTTCGCGGTACCGTTGATGCCAAGTCTGCCGTCGATGGCTCCTGGAAAACTCTCAGACCGAGCGTCTTGGTCTCTCGAGAGTCCGGTGATAAAGGCGTCATCCTTCAAAGAACTCAAACGTGTATATACAATGAATGGAAAGGATTATTTGGATGGACTTATGATCTTCGGGCCTTATTTGCAAGATCTTTGAGACAGCAAGAATCTACATCTTTAAGGAAGGTGCCTTTTGTTCTAATCGATGTTGAACGGCGACCATCTACTCTGGAGTATGTTGTTGTCAACATGGATGGCTCAAGACATCCGTTACCTCTAACAACAGTTTATCATAAATTGCAACCAATAAATGCTTCTCCTTATACTTTCTTGCAAGCGCTTTTTGGGCATGAATATCCCGTTGGACTGCTAGATGAAGAGAAAATACTTCCGTTGGGGAAGGATATCACTGTTGTTGGCATTGGCAGATTAAATAATGGAGTTGCTGAAATTAAGTCATGCAAAGATATACCATATTTTCTATCTGACTTGGGCAAAGATCATATGATAGTGGATCTTTCCATAAAAACAAAAATTCTGTTTTGGGGTGGCATTGCTATCGGTTCAATGTCAGTTGGGATCCTTGGCTATGCCGTTGTGAGGAACTGGAATAAATGGAAACAGTGGAAGCTACAGAGGCAGCTCCAGCAACAAAGGCAAGCAGTGAATAATGTTGAACCTCATATGGATGATGAGATTGAAAATGTTCCAGATGGACAATTATGTATCATATGTCTGATGAGGAGAAGGCGTTCTGCCTTCATCCCCTGTGGGCATCTTGTGTGTTGCCAAGGGTGTGCCATTTCAGTTGAACGTGAAGTGGCACCTAAATGTCCTGTTTGTCGTCAGGATGTTCGAAATTCAGTGCGGATTTTTGAAACATAG 1167 0.4576 MSHHQQALVSLLSQLALSFDGAVLGFALAYAAIRTFFKFSATSAALRKLRRAPYLSVSDLRSLLADVPSDADSTSDGGTIVIVRGTVDAKSAVDGSWKTLRPSVLVSRESGDKGVILQRTQTCIYNEWKGLFGWTYDLRALFARSLRQQESTSLRKVPFVLIDVERRPSTLEYVVVNMDGSRHPLPLTTVYHKLQPINASPYTFLQALFGHEYPVGLLDEEKILPLGKDITVVGIGRLNNGVAEIKSCKDIPYFLSDLGKDHMIVDLSIKTKILFWGGIAIGSMSVGILGYAVVRNWNKWKQWKLQRQLQQQRQAVNNVEPHMDDEIENVPDGQLCIICLMRRRRSAFIPCGHLVCCQGCAISVEREVAPKCPVCRQDVRNSVRIFET 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03071 388 SMART ring_2 336 375 IPR001841 -
Vimu11g03071 388 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 320 387 IPR013083 -
Vimu11g03071 388 ProSiteProfiles Zinc finger RING-type profile. 336 376 IPR001841 -
Vimu11g03071 388 CDD RING-HC_SPL2-like 331 377 - -
Vimu11g03071 388 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SPL2 1 387 IPR044247 GO:0004842
Vimu11g03071 388 Pfam Zinc finger, C3HC4 type (RING finger) 334 380 - -
Vimu11g03071 388 Pfam E3 Ubiquitin ligase 142 288 IPR022170 GO:0004842|GO:0006996|GO:0016567
Vimu11g03071 388 SUPERFAMILY RING/U-box 335 381 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03071 Vimu-Chr11 50240297 50248989 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03071 333 385 C3H Transcription Factor Family AT3G06140 37.736 1.45e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03071 K15688 - gmx:100811939 633.639
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g03071 11 50240297 50248989 Vimu11g03071 11 50240297 50248989 ECH