Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03070 ATGGAACCAAATCCAACATCAGATCATAGTTTGGACTGGTTTGAAGGTTCTGTTTCTTTCTTTCCACTTCCACCATTCTTAGACGATCCATATAACTGTACTGACATCCAACTGTGGGATCAAGACATAAGCAGCCATTATCAAACTGATGCTAATACCAGTTCCCCTAATGCCACCAACATTGCAACTAGCACAACACCCCCTGAGCCTTGTGCTTCTAACAACCTTCCACTCTCTGATTTGCCCAAGAAAAGAAGTGCCACTGATGATTCAAGTCTCAGACAACCACAGAACCACAAGCACAAGAAAATCAAGAGCAAACCATTGAATAATGAAGCAGATAGTGGAGACGCAGAAGGGACAACCACAGTTAGAAAACCTGGTGGGAACAAGAAAGGTGCTGCTAAGGGTGTGGCAAATAACTGCAACAACAAAGAAGGAAGGTGGGCTGAACAGTTGCTCAACCCTTGTGCTGCAGCCATAACTGGTGGAAATCTGACCCGTGTGCAACACCTCTTGTATGTTCTCCATGAGTTAGCTTCACCTACTGGTGATGCTAACCACAGGCTTGCAGCACATGGTCTTAAAGCACTGACACACCACTTATCGTCTTCTCTAGCATCTACCTCTTCAGGGTCCATGACTTTTGCATCTACTGAGCCACGGTTCTTTCAAAAGACACTACTCAAGTTCTATGAGGTTAGCCCTTGGTTTTCTTTTCCAAACAACATAGCAAATGCTTCCATCCTTCAAGTTCTTGGGGAAGACAATGACAATTCGCGCACCCTTCACATCCTTGACATTGGAGCCTCTCATGGAATGCAATGGCCAACATTTCTAGAGGCCCTGAGTCGCAGACCTGGTGGACCTCCTCCACTGGTTCGCCTCACTGTGGTCACGGCTTCTTCCACTGAAATTGACACCCCATTTTCCATTGGTCCTCCCGGTGACAACTTCTCATCTAGACTCCTTGGTTTTGCTCAGTTAATGAACGTGAATTTGCAGATTAAAAGGCTAGATAATTGTCCATTGCATACACTGAGTGCTCAAAGTGTTGACACCTCCCCGGATGAAATCTTTGTTGTTTGTGCGCAGTTTAGGCTGCATCAGTTAAATCACAATAGCAATGATGAAAAGAGAGAGTTTCTGAAAGTTCTGAGGAACATGGAGCCCAAAGGGGTGATACTAAGTGATAACAACATGGAATGTTGTTGCAGTGGTTGTGGGGATTTTGCCATGGGGTTCTCTCGAAGGGTGGAGTACTTGTGGAAGTTTTTGGACTCAACAAGCTCAGCGTTTAAGGGTCGTGACAGTGATGAAAGGAGAGTGATGGAAGGTGAGGCAGCAAAGGCATTGACAAACCAGCGAGAGATGAATGAAGGGAAGGAAAAATGGTGTGAGAGAATGAAAGAAGCCGGGTTTGTGGGGGAAGTACTTGGTGAGGATGCAATAGATGGAGGTAGAGCTTTGCTGAGAAAGTATGATACTAATTGGGAGATGAAAGTTGAAGATGACAATAGAAGTGTAGGACTATGGTGGAAGGGGCAACCTGTTTCTTTCTGCACCTTTTGGAAGCTGGATGGCAATGATCAGAGCTCAACATTCACATCATGA 1614 0.4523 MEPNPTSDHSLDWFEGSVSFFPLPPFLDDPYNCTDIQLWDQDISSHYQTDANTSSPNATNIATSTTPPEPCASNNLPLSDLPKKRSATDDSSLRQPQNHKHKKIKSKPLNNEADSGDAEGTTTVRKPGGNKKGAAKGVANNCNNKEGRWAEQLLNPCAAAITGGNLTRVQHLLYVLHELASPTGDANHRLAAHGLKALTHHLSSSLASTSSGSMTFASTEPRFFQKTLLKFYEVSPWFSFPNNIANASILQVLGEDNDNSRTLHILDIGASHGMQWPTFLEALSRRPGGPPPLVRLTVVTASSTEIDTPFSIGPPGDNFSSRLLGFAQLMNVNLQIKRLDNCPLHTLSAQSVDTSPDEIFVVCAQFRLHQLNHNSNDEKREFLKVLRNMEPKGVILSDNNMECCCSGCGDFAMGFSRRVEYLWKFLDSTSSAFKGRDSDERRVMEGEAAKALTNQREMNEGKEKWCERMKEAGFVGEVLGEDAIDGGRALLRKYDTNWEMKVEDDNRSVGLWWKGQPVSFCTFWKLDGNDQSSTFTS 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03070 537 MobiDBLite consensus disorder prediction 47 137 - -
Vimu11g03070 537 MobiDBLite consensus disorder prediction 47 73 - -
Vimu11g03070 537 Pfam GRAS domain family 151 525 IPR005202 -
Vimu11g03070 537 ProSiteProfiles GRAS family profile. 141 525 IPR005202 -
Vimu11g03070 537 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 130 513 IPR005202 -
Vimu11g03070 537 MobiDBLite consensus disorder prediction 83 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03070 Vimu-Chr11 50237553 50239166 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03070 3 525 GRAS Transcription Factor Family AT3G13840 51.763 3.64e-174 499
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vimu11g03070 GRAS 4.8e-74 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03070 - - vun:114166202 989.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g03070 11 50237553 50239166 Vimu11g03070 11 50237553 50239166 ECH
Vimu11g03070 11 50237553 50239166 Vimu4g00386 4 2755001 2756362 PCT